Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL158211.1-201ENST00000566763 763 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 MIR4290-201ENST00000583807 95 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 uc_338.11-201ENST00000619132 160 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 AC078938.1-201ENST00000620993 318 ntBASIC-0.17□□□□□ -2.44
USP54Q70EL1 SNORA25.3-201ENST00000363205 127 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 RNU6-1097P-201ENST00000363586 107 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 RNU6-815P-201ENST00000384080 113 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 MIR520C-201ENST00000385005 87 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 RNA5SP482-201ENST00000391269 118 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 MIR1827-201ENST00000408549 66 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 MIR1185-2-201ENST00000408687 86 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 Z98949.2-201ENST00000440996 144 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC-0.18□□□□□ -2.44
USP54Q70EL1 AC010493.1-201ENST00000513479 292 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 AL078596.1-201ENST00000624856 447 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC-0.18□□□□□ -2.44
USP54Q70EL1 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-0.18□□□□□ -2.44
USP54Q70EL1 SNORA9.1-201ENST00000362412 131 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 SNORA12.1-201ENST00000390873 148 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 SNORA40.8-201ENST00000411034 126 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 MTND3P1-201ENST00000441336 220 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC-0.18□□□□□ -2.44
USP54Q70EL1 AC093534.1-201ENST00000504977 132 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC-0.18□□□□□ -2.44
USP54Q70EL1 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC-0.18□□□□□ -2.44
USP54Q70EL1 AC025449.1-201ENST00000603896 529 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 AC015726.2-201ENST00000620112 122 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 U6.114-201ENST00000636407 96 ntBASIC-0.18□□□□□ -2.44
USP54Q70EL1 MTND5P17-201ENST00000418405 1603 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 RNY1P8-201ENST00000383970 114 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 RNU6-434P-201ENST00000384376 107 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 EEF1A1P39-201ENST00000440791 250 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC-0.19□□□□□ -2.44
USP54Q70EL1 AC091133.4-201ENST00000511142 308 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 AC091874.1-201ENST00000511402 339 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 MIR3941-201ENST00000582572 103 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 RSL24D1P11-201ENST00000591045 491 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 AC013244.3-201ENST00000605614 388 ntBASIC-0.19□□□□□ -2.44
USP54Q70EL1 RNU6-827P-201ENST00000365553 106 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 SNORA2B-201ENST00000384583 137 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 AL139396.1-201ENST00000421137 167 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 AL392103.1-201ENST00000447000 198 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 SNORD65B-201ENST00000459126 73 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 AC116562.3-201ENST00000506136 177 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 RNU6-276P-201ENST00000516114 96 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 SNORD111.1-201ENST00000516421 86 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 RNU2-46P-201ENST00000517038 113 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 RNU6-323P-201ENST00000521915 107 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 AC068587.5-201ENST00000528506 175 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 DEFB131C-201ENST00000528817 165 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC-0.2□□□□□ -2.44
USP54Q70EL1 MIR4431-201ENST00000579990 94 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 AC091178.2-201ENST00000584401 117 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 AC005771.1-201ENST00000585581 349 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 AL117336.2-201ENST00000602435 335 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 SNORA43.4-201ENST00000629559 138 ntBASIC-0.2□□□□□ -2.44
USP54Q70EL1 SNORA32.1-201ENST00000364514 115 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 MTATP6P20-201ENST00000414147 562 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 CALM2P4-201ENST00000430810 426 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 RPS29P8-201ENST00000445109 171 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.21□□□□□ -2.44
USP54Q70EL1 AC112204.1-201ENST00000502591 103 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 RNU6-344P-201ENST00000516635 111 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 RNA5SP54-201ENST00000516951 92 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 MTND4LP18-201ENST00000526864 291 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 RPL21P9-201ENST00000556149 474 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 BNIP3P40-201ENST00000596017 556 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 AC104408.1-201ENST00000605241 170 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 RNU6-302P-201ENST00000365249 107 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 SNORD115-7-201ENST00000365306 82 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 MIR604-201ENST00000384880 94 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 RNU2-8P-201ENST00000410727 190 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 PDCL2P1-201ENST00000419302 352 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.21□□□□□ -2.44
USP54Q70EL1 SNORA19.3-201ENST00000516165 130 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.21□□□□□ -2.44
USP54Q70EL1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC-0.21□□□□□ -2.44
USP54Q70EL1 AC138649.3-201ENST00000622154 254 ntBASIC-0.21□□□□□ -2.44
USP54Q70EL1 RNU6-393P-201ENST00000384475 107 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 MIR573-201ENST00000384964 99 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 MIR644A-201ENST00000385262 94 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 RNA5SP496-201ENST00000391240 109 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC-0.22□□□□□ -2.44
USP54Q70EL1 MTCO2P23-201ENST00000425216 680 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 SEPT7P4-201ENST00000437076 306 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 AC010469.2-201ENST00000496412 480 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 RNU6-977P-201ENST00000516411 103 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 AP003181.2-201ENST00000528941 181 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 AC027288.2-201ENST00000553028 243 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 AC112693.2-201ENST00000556538 232 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 AC137590.2-201ENST00000619709 240 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 AC027279.3-201ENST00000625055 122 ntBASIC-0.22□□□□□ -2.44
USP54Q70EL1 MIRLET7C-201ENST00000362160 84 ntBASIC-0.23□□□□□ -2.45
USP54Q70EL1 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.23□□□□□ -2.45
USP54Q70EL1 SNORD118-201ENST00000363593 134 ntBASIC-0.23□□□□□ -2.45
USP54Q70EL1 RNU6V-201ENST00000384105 107 ntBASIC-0.23□□□□□ -2.45
USP54Q70EL1 MIR610-201ENST00000385139 96 ntBASIC-0.23□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms