Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 RPL30P10-201ENST00000488148 337 ntBASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 AC093852.1-201ENST00000503587 266 ntBASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 AC109635.3-201ENST00000529536 185 ntBASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 TPRKBP2-201ENST00000565969 475 ntBASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 AC091895.1-201ENST00000624494 256 ntBASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 AC024614.3-201ENST00000637860 256 ntBASIC1.08□□□□□ -2.24
TRIM40Q6P9F5 RNU6-53P-201ENST00000365367 106 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 RNU6-17P-201ENST00000384245 107 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 RNU6-18P-201ENST00000384527 107 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 RNU6-541P-201ENST00000384709 110 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 MIR181A1-201ENST00000385026 110 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AL445305.1-201ENST00000432577 575 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AC103851.1-201ENST00000506833 274 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AK6P2-201ENST00000549020 471 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AL512310.8-201ENST00000550183 120 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AC019288.1-201ENST00000557918 224 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 CYP3A52P-201ENST00000563326 91 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 MIR5696-201ENST00000578474 85 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AC022217.4-201ENST00000604389 163 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AC021506.2-201ENST00000612354 169 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 AC009248.2-201ENST00000619826 254 ntBASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.07□□□□□ -2.24
TRIM40Q6P9F5 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 RNU5F-3P-201ENST00000363767 117 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 RNU6-280P-201ENST00000364145 104 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 RNA5SP259-201ENST00000365541 109 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 Y_RNA.402-201ENST00000383972 102 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 Y_RNA.415-201ENST00000384012 112 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 RNU6-159P-201ENST00000391080 106 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 RNU6-373P-201ENST00000411247 98 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 AC010154.1-201ENST00000425857 269 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 TOMM22P2-201ENST00000430735 237 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 MTATP6P13-201ENST00000438531 667 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 RPS29P28-201ENST00000446439 141 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 AC091179.3-201ENST00000474761 144 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 AC093534.1-201ENST00000504977 132 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 SNORA31.10-201ENST00000516482 106 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 UBL5P4-201ENST00000562584 236 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 AC022432.1-201ENST00000595739 310 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 7SK.7-201ENST00000603504 247 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 AC009033.1-201ENST00000624279 431 ntBASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
TRIM40Q6P9F5 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 RNU6-727P-201ENST00000363592 107 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 RNU6-793P-201ENST00000384233 104 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 RNU6-1031P-201ENST00000384773 107 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 RPL30P16-201ENST00000419341 429 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 AC243428.1-201ENST00000421099 264 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 AC005002.2-201ENST00000438228 269 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 HMGN1P7-201ENST00000491722 313 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 RNU7-128P-201ENST00000517247 62 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 AL137100.2-201ENST00000555786 315 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 MIR3942-201ENST00000585264 109 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 AC015540.1-201ENST00000615828 501 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 AC090617.10-201ENST00000624308 134 ntBASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.05□□□□□ -2.24
TRIM40Q6P9F5 RNU6-1266P-201ENST00000362794 105 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 RNU6-306P-201ENST00000384617 107 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 RNU6-939P-201ENST00000384634 107 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 RNU6-1186P-201ENST00000410429 97 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 RN7SKP200-201ENST00000410564 320 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 DLGAP5P1-201ENST00000430307 464 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 RPL31P58-201ENST00000469001 379 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 AC087343.1-201ENST00000477341 475 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 Y_RNA.676-201ENST00000516393 96 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 AC134698.4-201ENST00000523451 826 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 FRG2DP-202ENST00000566967 323 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 MIR4295-201ENST00000585286 85 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 AL390123.1-201ENST00000603216 237 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 MZT1P2-201ENST00000604387 248 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 U6.73-201ENST00000619194 103 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 MIR8054-201ENST00000620877 86 ntBASIC1.04□□□□□ -2.24
TRIM40Q6P9F5 RNA5SP327-201ENST00000362494 101 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 RNU6-596P-201ENST00000365395 98 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 MIR618-201ENST00000385287 98 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 AC245047.3-201ENST00000429428 127 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 OR2A41P-201ENST00000473586 105 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 AC093303.1-201ENST00000514549 295 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 RNU7-175P-201ENST00000515915 61 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 RNU6-864P-201ENST00000516256 108 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms