Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MTCO2P12-201ENST00000427426 682 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 SNORD65B-201ENST00000459126 73 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 MTND1P35-201ENST00000526739 508 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 DEFB131C-201ENST00000528817 165 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 SUB1P2-201ENST00000556401 297 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AC011458.1-201ENST00000604034 617 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 AC006566.1-201ENST00000608943 513 ntBASIC0.28□□□□□ -2.36
CCDC88AQ3V6T2 MIR103A2-201ENST00000362154 78 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-266P-201ENST00000364225 107 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 AC002429.1-201ENST00000437672 148 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 BET1P1-201ENST00000482276 359 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-922P-201ENST00000516753 99 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-430P-201ENST00000517078 107 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 AC025647.1-201ENST00000517879 253 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 AC026470.2-201ENST00000561492 181 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 MRPS18CP6-201ENST00000423587 223 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 RPL23AP75-201ENST00000491601 451 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 MRPS36P4-201ENST00000534436 298 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 MIR5190-201ENST00000581537 80 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 AC087683.1-201ENST00000591187 441 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 SNORA28-201ENST00000606769 126 ntBASIC0.27□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-660P-201ENST00000364566 109 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 RNU4-12P-201ENST00000365233 139 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-533P-201ENST00000384144 107 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-331P-201ENST00000384724 107 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-1093P-201ENST00000391194 107 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-57P-201ENST00000411348 103 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 MTCO2P34-201ENST00000421994 607 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 Z98949.2-201ENST00000440996 144 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 MTCO3P8-201ENST00000453691 755 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 AC091133.4-201ENST00000511142 308 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 AL157687.1-201ENST00000554853 619 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 AC025449.1-201ENST00000603896 529 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 AC104695.3-201ENST00000604052 296 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 AC002044.1-201ENST00000606707 158 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 AL391903.3-201ENST00000612158 163 ntBASIC0.26□□□□□ -2.37
CCDC88AQ3V6T2 SNORD113-6-201ENST00000363345 75 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 RNU4-76P-201ENST00000364509 141 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 SNORA16.2-201ENST00000390991 127 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 RNA5SP482-201ENST00000391269 118 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 MTCO1P19-201ENST00000443487 500 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 RPS29P15-201ENST00000458329 171 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 HMGN2P26-201ENST00000463169 339 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AL163973.1-201ENST00000484753 577 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 RNU2-69P-201ENST00000516061 100 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-1220P-201ENST00000517126 108 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AL162730.1-201ENST00000605734 292 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 AL133215.3-201ENST00000609801 448 ntBASIC0.25□□□□□ -2.37
CCDC88AQ3V6T2 Y_RNA.167-201ENST00000363735 109 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-74P-201ENST00000384235 107 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 RPS26P5-201ENST00000418544 335 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 MTCO2P18-201ENST00000457151 658 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AL049830.1-201ENST00000468034 425 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-917P-201ENST00000516294 104 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AP003716.2-201ENST00000528260 108 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AP001506.1-201ENST00000615444 211 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AC006504.8-201ENST00000621046 635 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AC068647.2-201ENST00000637380 353 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AL390237.1-201ENST00000404226 1415 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 MTND4P9-201ENST00000507819 1346 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 SNORD113.3-201ENST00000364630 78 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-1103P-201ENST00000384150 107 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AC080078.2-201ENST00000603766 501 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AP000907.4-201ENST00000604143 237 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 MIR8076-201ENST00000611401 83 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AL138726.1-201ENST00000614873 333 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 AC007014.2-201ENST00000615581 479 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 MIR4315-1-201ENST00000636800 73 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 260.5 ms