Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MIR320B2-201ENST00000408479 138 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC-0.03□□□□□ -2.41
FOXA3P55318 HMGN2P26-201ENST00000463169 339 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 AF186996.7-201ENST00000492781 209 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.03□□□□□ -2.41
FOXA3P55318 AC091133.4-201ENST00000511142 308 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 RNU6-344P-201ENST00000516635 111 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 MTND2P32-201ENST00000521584 1038 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC-0.03□□□□□ -2.41
FOXA3P55318 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.03□□□□□ -2.41
FOXA3P55318 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.03□□□□□ -2.41
FOXA3P55318 AC022523.2-201ENST00000561045 150 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 MIR4703-201ENST00000577728 79 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 MIR4514-201ENST00000581410 57 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 SNORD11B-201ENST00000607707 90 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 MIR6515-201ENST00000619843 57 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 AC092634.7-201ENST00000621022 103 ntBASIC-0.03□□□□□ -2.41
FOXA3P55318 MIR411-201ENST00000362239 96 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 Y_RNA.238-201ENST00000364441 102 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 RNU4-67P-201ENST00000364569 141 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 SNORD113.3-201ENST00000364630 78 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 Y_RNA.476-201ENST00000384347 108 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 SNORA2B-201ENST00000384583 137 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 RNU6-906P-201ENST00000384700 70 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 MIR573-201ENST00000384964 99 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 CALM2P3-201ENST00000400429 449 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 RNA5SP95-201ENST00000410319 137 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 SNORD83.1-201ENST00000411362 77 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 ZNF885P-201ENST00000420174 1098 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 GPR143P-201ENST00000434155 205 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC-0.04□□□□□ -2.42
FOXA3P55318 AC084290.1-201ENST00000434995 374 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.04□□□□□ -2.42
FOXA3P55318 AC079781.2-201ENST00000446424 169 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 NDUFB4P10-201ENST00000452541 359 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 SNORD65B-201ENST00000459126 73 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 snoU109.3-201ENST00000459477 145 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC091021.1-201ENST00000468051 388 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 CYCTP-201ENST00000504253 315 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC093534.1-201ENST00000504977 132 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC079140.5-201ENST00000507882 310 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 MTND1P22-201ENST00000510572 951 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC105417.1-201ENST00000514691 285 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC074133.1-201ENST00000515696 183 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 RN7SKP164-201ENST00000516138 266 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 RNU4-77P-201ENST00000516692 156 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 RNU7-28P-201ENST00000516759 62 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AP001372.4-201ENST00000524889 472 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-0.04□□□□□ -2.42
FOXA3P55318 AK6P2-201ENST00000549020 471 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 MIR4509-3-201ENST00000578671 94 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 MIR4509-2-201ENST00000583920 94 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 MIR4509-1-201ENST00000618224 94 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC015726.2-201ENST00000620112 122 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 AC007671.2-201ENST00000637344 619 ntBASIC-0.04□□□□□ -2.42
FOXA3P55318 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC-0.04□□□□□ -2.42
FOXA3P55318 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC-0.04□□□□□ -2.42
FOXA3P55318 MTND4P9-201ENST00000507819 1346 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 RNU6-1317P-201ENST00000364582 104 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 MIR520F-201ENST00000384824 87 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 MIR520C-201ENST00000385005 87 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 SNORA40.4-201ENST00000390971 128 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 MIR891A-201ENST00000401237 79 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.05□□□□□ -2.42
FOXA3P55318 PIGPP3-201ENST00000425307 415 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-0.05□□□□□ -2.42
FOXA3P55318 AC073261.1-201ENST00000429409 121 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 Z98949.2-201ENST00000440996 144 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 MRPS10P1-201ENST00000448483 130 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC-0.05□□□□□ -2.42
FOXA3P55318 RNU6-1037P-201ENST00000459571 107 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC-0.05□□□□□ -2.42
FOXA3P55318 SNORD27.1-201ENST00000516319 72 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 RNU6-1291P-201ENST00000516591 104 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 RNU7-172P-201ENST00000517125 64 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 MTND1P5-201ENST00000517906 940 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 AC023442.1-201ENST00000531247 422 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-0.05□□□□□ -2.42
FOXA3P55318 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.05□□□□□ -2.42
FOXA3P55318 MTCO3P23-201ENST00000561363 289 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 MIR98-201ENST00000606724 119 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 OR5AK4P-201ENST00000635912 903 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 AC010487.4-201ENST00000637027 61 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 AC006927.3-201ENST00000638789 384 ntBASIC-0.05□□□□□ -2.42
FOXA3P55318 RNA5SP214-201ENST00000363378 118 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 RNU6-727P-201ENST00000363592 107 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 RNA5SP517-201ENST00000364724 117 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 RNU6-1105P-201ENST00000384774 107 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 MIR520G-201ENST00000385064 90 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 MIR518A1-201ENST00000385068 85 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 MIR520H-201ENST00000385126 88 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 RNA5SP482-201ENST00000391269 118 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 SSR1P2-201ENST00000415208 787 ntBASIC-0.06□□□□□ -2.42
FOXA3P55318 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-0.06□□□□□ -2.42
FOXA3P55318 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-0.06□□□□□ -2.42
FOXA3P55318 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-0.06□□□□□ -2.42
FOXA3P55318 UBE2D3P4-201ENST00000441973 436 ntBASIC-0.06□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms