Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.08□□□□□ -2.24
RFX3P48380 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.08□□□□□ -2.24
RFX3P48380 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.08□□□□□ -2.24
RFX3P48380 OR2A41P-201ENST00000473586 105 ntBASIC1.08□□□□□ -2.24
RFX3P48380 HMGN1P12-201ENST00000499125 195 ntBASIC1.08□□□□□ -2.24
RFX3P48380 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.08□□□□□ -2.24
RFX3P48380 SNORA25.14-201ENST00000516481 132 ntBASIC1.08□□□□□ -2.24
RFX3P48380 RNU1-142P-201ENST00000516682 145 ntBASIC1.08□□□□□ -2.24
RFX3P48380 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.08□□□□□ -2.24
RFX3P48380 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.08□□□□□ -2.24
RFX3P48380 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.08□□□□□ -2.24
RFX3P48380 AC019193.3-201ENST00000609144 554 ntBASIC1.08□□□□□ -2.24
RFX3P48380 AC091895.1-201ENST00000624494 256 ntBASIC1.08□□□□□ -2.24
RFX3P48380 RNU6-1123P-201ENST00000362347 106 ntBASIC1.07□□□□□ -2.24
RFX3P48380 RNU6-1252P-201ENST00000363054 104 ntBASIC1.07□□□□□ -2.24
RFX3P48380 SNORD116-11-201ENST00000383882 92 ntBASIC1.07□□□□□ -2.24
RFX3P48380 Y_RNA.402-201ENST00000383972 102 ntBASIC1.07□□□□□ -2.24
RFX3P48380 MIR487A-201ENST00000385009 80 ntBASIC1.07□□□□□ -2.24
RFX3P48380 MIR1285-1-201ENST00000408593 84 ntBASIC1.07□□□□□ -2.24
RFX3P48380 RNA5SP504-201ENST00000410676 117 ntBASIC1.07□□□□□ -2.24
RFX3P48380 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.07□□□□□ -2.24
RFX3P48380 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.07□□□□□ -2.24
RFX3P48380 HMGN1P7-201ENST00000491722 313 ntBASIC1.07□□□□□ -2.24
RFX3P48380 AC093534.1-201ENST00000504977 132 ntBASIC1.07□□□□□ -2.24
RFX3P48380 RNU1-117P-201ENST00000517041 158 ntBASIC1.07□□□□□ -2.24
RFX3P48380 MIR3672-201ENST00000584290 82 ntBASIC1.07□□□□□ -2.24
RFX3P48380 AL359075.3-201ENST00000613288 217 ntBASIC1.07□□□□□ -2.24
RFX3P48380 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.07□□□□□ -2.24
RFX3P48380 Y_RNA.9-201ENST00000362354 101 ntBASIC1.06□□□□□ -2.24
RFX3P48380 RNU6-596P-201ENST00000365395 98 ntBASIC1.06□□□□□ -2.24
RFX3P48380 RNU6-17P-201ENST00000384245 107 ntBASIC1.06□□□□□ -2.24
RFX3P48380 RNU6-18P-201ENST00000384527 107 ntBASIC1.06□□□□□ -2.24
RFX3P48380 RNU6-541P-201ENST00000384709 110 ntBASIC1.06□□□□□ -2.24
RFX3P48380 MIR518E-201ENST00000385252 88 ntBASIC1.06□□□□□ -2.24
RFX3P48380 RNA5SP109-201ENST00000391010 116 ntBASIC1.06□□□□□ -2.24
RFX3P48380 RNA5SP467-201ENST00000391274 118 ntBASIC1.06□□□□□ -2.24
RFX3P48380 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.06□□□□□ -2.24
RFX3P48380 AC016909.1-201ENST00000415916 166 ntBASIC1.06□□□□□ -2.24
RFX3P48380 AL590632.1-201ENST00000424289 371 ntBASIC1.06□□□□□ -2.24
RFX3P48380 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.06□□□□□ -2.24
RFX3P48380 Z82188.1-201ENST00000436709 154 ntBASIC1.06□□□□□ -2.24
RFX3P48380 RPS29P28-201ENST00000446439 141 ntBASIC1.06□□□□□ -2.24
RFX3P48380 RPS26P45-201ENST00000471748 340 ntBASIC1.06□□□□□ -2.24
RFX3P48380 AC027288.2-201ENST00000553028 243 ntBASIC1.06□□□□□ -2.24
RFX3P48380 TPRKBP2-201ENST00000565969 475 ntBASIC1.06□□□□□ -2.24
RFX3P48380 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.06□□□□□ -2.24
RFX3P48380 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.06□□□□□ -2.24
RFX3P48380 MIR5696-201ENST00000578474 85 ntBASIC1.06□□□□□ -2.24
RFX3P48380 MIR3664-201ENST00000579074 99 ntBASIC1.06□□□□□ -2.24
RFX3P48380 AC097065.2-201ENST00000608159 533 ntBASIC1.06□□□□□ -2.24
RFX3P48380 AC040896.1-201ENST00000613819 479 ntBASIC1.06□□□□□ -2.24
RFX3P48380 MIR8065-201ENST00000620577 100 ntBASIC1.06□□□□□ -2.24
RFX3P48380 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
RFX3P48380 RNY4P14-201ENST00000363656 96 ntBASIC1.05□□□□□ -2.24
RFX3P48380 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.05□□□□□ -2.24
RFX3P48380 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
RFX3P48380 MIR1185-2-201ENST00000408687 86 ntBASIC1.05□□□□□ -2.24
RFX3P48380 RNA5SP118-201ENST00000410385 109 ntBASIC1.05□□□□□ -2.24
RFX3P48380 RPL37P10-201ENST00000412884 288 ntBASIC1.05□□□□□ -2.24
RFX3P48380 AC009161.1-201ENST00000417306 376 ntBASIC1.05□□□□□ -2.24
RFX3P48380 MTATP6P26-201ENST00000445926 662 ntBASIC1.05□□□□□ -2.24
RFX3P48380 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.05□□□□□ -2.24
RFX3P48380 RNU7-34P-201ENST00000459394 64 ntBASIC1.05□□□□□ -2.24
RFX3P48380 AL163195.1-201ENST00000496941 348 ntBASIC1.05□□□□□ -2.24
RFX3P48380 AC022432.1-201ENST00000595739 310 ntBASIC1.05□□□□□ -2.24
RFX3P48380 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.05□□□□□ -2.24
RFX3P48380 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.05□□□□□ -2.24
RFX3P48380 AC024614.3-201ENST00000637860 256 ntBASIC1.05□□□□□ -2.24
RFX3P48380 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
RFX3P48380 Y_RNA.41-201ENST00000362646 102 ntBASIC1.04□□□□□ -2.24
RFX3P48380 RNU6-1266P-201ENST00000362794 105 ntBASIC1.04□□□□□ -2.24
RFX3P48380 Y_RNA.116-201ENST00000363292 103 ntBASIC1.04□□□□□ -2.24
RFX3P48380 RNU6-873P-201ENST00000363833 107 ntBASIC1.04□□□□□ -2.24
RFX3P48380 Y_RNA.796-201ENST00000364268 102 ntBASIC1.04□□□□□ -2.24
RFX3P48380 Y_RNA.799-201ENST00000364992 102 ntBASIC1.04□□□□□ -2.24
RFX3P48380 RNA5SP259-201ENST00000365541 109 ntBASIC1.04□□□□□ -2.24
RFX3P48380 Y_RNA.490-201ENST00000384413 102 ntBASIC1.04□□□□□ -2.24
RFX3P48380 RNU6-159P-201ENST00000391080 106 ntBASIC1.04□□□□□ -2.24
RFX3P48380 RPL21P1-201ENST00000399532 476 ntBASIC1.04□□□□□ -2.24
RFX3P48380 AL591704.2-201ENST00000421658 181 ntBASIC1.04□□□□□ -2.24
RFX3P48380 AL606517.2-201ENST00000442855 241 ntBASIC1.04□□□□□ -2.24
RFX3P48380 MTCO2P7-201ENST00000446518 666 ntBASIC1.04□□□□□ -2.24
RFX3P48380 RNU7-175P-201ENST00000515915 61 ntBASIC1.04□□□□□ -2.24
RFX3P48380 RNA5SP404-201ENST00000517118 132 ntBASIC1.04□□□□□ -2.24
RFX3P48380 AC134698.4-201ENST00000523451 826 ntBASIC1.04□□□□□ -2.24
RFX3P48380 AL137100.2-201ENST00000555786 315 ntBASIC1.04□□□□□ -2.24
RFX3P48380 AC004584.2-201ENST00000570407 410 ntBASIC1.04□□□□□ -2.24
RFX3P48380 AL929325.1-201ENST00000603096 117 ntBASIC1.04□□□□□ -2.24
RFX3P48380 AF250324.2-201ENST00000608299 610 ntBASIC1.04□□□□□ -2.24
RFX3P48380 AC068137.4-201ENST00000638485 296 ntBASIC1.04□□□□□ -2.24
RFX3P48380 MTND4P12-201ENST00000498999 1377 ntBASIC1.04□□□□□ -2.24
RFX3P48380 RNU6-623P-201ENST00000363143 105 ntBASIC1.03□□□□□ -2.24
RFX3P48380 RNU6-1013P-201ENST00000384180 107 ntBASIC1.03□□□□□ -2.24
RFX3P48380 RNU6-793P-201ENST00000384233 104 ntBASIC1.03□□□□□ -2.24
RFX3P48380 Y_RNA.573-201ENST00000384763 105 ntBASIC1.03□□□□□ -2.24
RFX3P48380 RN7SKP200-201ENST00000410564 320 ntBASIC1.03□□□□□ -2.24
RFX3P48380 AC243428.1-201ENST00000421099 264 ntBASIC1.03□□□□□ -2.24
RFX3P48380 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.03□□□□□ -2.24
RFX3P48380 MTATP6P13-201ENST00000438531 667 ntBASIC1.03□□□□□ -2.24
RFX3P48380 RPS27P1-201ENST00000450552 247 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms