Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
MSX1P28360 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
MSX1P28360 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
MSX1P28360 Y_RNA.49-201ENST00000362714 112 ntBASIC3.64□□□□□ -1.83
MSX1P28360 RNU6-49P-201ENST00000384256 107 ntBASIC3.64□□□□□ -1.83
MSX1P28360 AL031121.1-201ENST00000406553 254 ntBASIC3.64□□□□□ -1.83
MSX1P28360 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.64□□□□□ -1.83
MSX1P28360 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.64□□□□□ -1.83
MSX1P28360 RPL23AP83-201ENST00000434984 473 ntBASIC3.64□□□□□ -1.83
MSX1P28360 AL500522.2-201ENST00000448562 343 ntBASIC3.64□□□□□ -1.83
MSX1P28360 AC096725.1-201ENST00000514266 313 ntBASIC3.64□□□□□ -1.83
MSX1P28360 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.64□□□□□ -1.83
MSX1P28360 AC012442.3-202ENST00000636742 206 ntBASIC3.64□□□□□ -1.83
MSX1P28360 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.64□□□□□ -1.83
MSX1P28360 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
MSX1P28360 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.63□□□□□ -1.83
MSX1P28360 Y_RNA.323-201ENST00000365157 109 ntBASIC3.63□□□□□ -1.83
MSX1P28360 SNORA51.10-201ENST00000384418 136 ntBASIC3.63□□□□□ -1.83
MSX1P28360 AL513477.1-202ENST00000417061 214 ntBASIC3.63□□□□□ -1.83
MSX1P28360 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.63□□□□□ -1.83
MSX1P28360 NDUFA4P2-201ENST00000489989 244 ntBASIC3.63□□□□□ -1.83
MSX1P28360 MRPS17P9-201ENST00000511924 393 ntBASIC3.63□□□□□ -1.83
MSX1P28360 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.63□□□□□ -1.83
MSX1P28360 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.63□□□□□ -1.83
MSX1P28360 AC090115.4-201ENST00000609970 188 ntBASIC3.63□□□□□ -1.83
MSX1P28360 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.63□□□□□ -1.83
MSX1P28360 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.62□□□□□ -1.83
MSX1P28360 AL589743.1-201ENST00000551932 2712 ntBASIC3.62□□□□□ -1.83
MSX1P28360 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
MSX1P28360 SNORA63.1-201ENST00000362493 131 ntBASIC3.62□□□□□ -1.83
MSX1P28360 Y_RNA.366-201ENST00000365540 102 ntBASIC3.62□□□□□ -1.83
MSX1P28360 SNORD24-201ENST00000383884 75 ntBASIC3.62□□□□□ -1.83
MSX1P28360 SNORD61-201ENST00000384252 73 ntBASIC3.62□□□□□ -1.83
MSX1P28360 MIR767-201ENST00000390228 109 ntBASIC3.62□□□□□ -1.83
MSX1P28360 AL590004.2-201ENST00000404787 371 ntBASIC3.62□□□□□ -1.83
MSX1P28360 RHEBP3-201ENST00000411920 351 ntBASIC3.62□□□□□ -1.83
MSX1P28360 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.62□□□□□ -1.83
MSX1P28360 EDDM3CP-201ENST00000415977 425 ntBASIC3.62□□□□□ -1.83
MSX1P28360 AC083863.1-201ENST00000438811 231 ntBASIC3.62□□□□□ -1.83
MSX1P28360 RPL39P34-201ENST00000477141 156 ntBASIC3.62□□□□□ -1.83
MSX1P28360 RNU6-1149P-201ENST00000516810 97 ntBASIC3.62□□□□□ -1.83
MSX1P28360 RNU6-762P-201ENST00000517107 102 ntBASIC3.62□□□□□ -1.83
MSX1P28360 AL591424.2-201ENST00000617023 128 ntBASIC3.62□□□□□ -1.83
MSX1P28360 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.62□□□□□ -1.83
MSX1P28360 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.62□□□□□ -1.83
MSX1P28360 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSX1P28360 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSX1P28360 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSX1P28360 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.62□□□□□ -1.83
MSX1P28360 AL596211.1-201ENST00000569873 2277 ntBASIC3.61□□□□□ -1.83
MSX1P28360 AL049781.1-201ENST00000623195 3585 ntBASIC3.61□□□□□ -1.83
MSX1P28360 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
MSX1P28360 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
MSX1P28360 IPO8P1-201ENST00000455509 3109 ntBASIC3.61□□□□□ -1.83
MSX1P28360 RNU6-888P-201ENST00000363010 101 ntBASIC3.61□□□□□ -1.83
MSX1P28360 RNA5SP97-201ENST00000365006 84 ntBASIC3.61□□□□□ -1.83
MSX1P28360 Y_RNA.544-201ENST00000384650 113 ntBASIC3.61□□□□□ -1.83
MSX1P28360 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX1P28360 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.61□□□□□ -1.83
MSX1P28360 RAC1P2-201ENST00000511164 579 ntBASIC3.61□□□□□ -1.83
MSX1P28360 RNU6-970P-201ENST00000516312 107 ntBASIC3.61□□□□□ -1.83
MSX1P28360 RNU6-1096P-201ENST00000517089 102 ntBASIC3.61□□□□□ -1.83
MSX1P28360 RNA5SP179-201ENST00000517284 121 ntBASIC3.61□□□□□ -1.83
MSX1P28360 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
MSX1P28360 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.61□□□□□ -1.83
MSX1P28360 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.61□□□□□ -1.83
MSX1P28360 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX1P28360 SNORA51-201ENST00000606420 132 ntBASIC3.61□□□□□ -1.83
MSX1P28360 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
MSX1P28360 AC006111.3-201ENST00000622137 383 ntBASIC3.61□□□□□ -1.83
MSX1P28360 AL035470.1-201ENST00000622571 220 ntBASIC3.61□□□□□ -1.83
MSX1P28360 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.61□□□□□ -1.83
MSX1P28360 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
MSX1P28360 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSX1P28360 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
MSX1P28360 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
MSX1P28360 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
MSX1P28360 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
MSX1P28360 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
MSX1P28360 RNU6-486P-201ENST00000363116 107 ntBASIC3.6□□□□□ -1.83
MSX1P28360 RNU1-105P-201ENST00000363470 161 ntBASIC3.6□□□□□ -1.83
MSX1P28360 SNORA63.5-201ENST00000363548 123 ntBASIC3.6□□□□□ -1.83
MSX1P28360 RNA5SP399-201ENST00000364003 117 ntBASIC3.6□□□□□ -1.83
MSX1P28360 MIR7-3-201ENST00000384898 110 ntBASIC3.6□□□□□ -1.83
MSX1P28360 MIR520G-201ENST00000385064 90 ntBASIC3.6□□□□□ -1.83
MSX1P28360 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.6□□□□□ -1.83
MSX1P28360 HMGN2P18-201ENST00000450680 270 ntBASIC3.6□□□□□ -1.83
MSX1P28360 RNU6-1270P-201ENST00000517128 108 ntBASIC3.6□□□□□ -1.83
MSX1P28360 RNU6-586P-201ENST00000517265 104 ntBASIC3.6□□□□□ -1.83
MSX1P28360 AC091167.4-201ENST00000605079 184 ntBASIC3.6□□□□□ -1.83
MSX1P28360 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
MSX1P28360 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.6□□□□□ -1.83
MSX1P28360 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
MSX1P28360 RNA5SP124-201ENST00000362739 110 ntBASIC3.59□□□□□ -1.83
MSX1P28360 RNA5SP322-201ENST00000363617 119 ntBASIC3.59□□□□□ -1.83
MSX1P28360 RNU6-440P-201ENST00000390882 105 ntBASIC3.59□□□□□ -1.83
MSX1P28360 Y_RNA.621-201ENST00000411065 96 ntBASIC3.59□□□□□ -1.83
MSX1P28360 SNORA71B-202ENST00000439232 272 ntBASIC3.59□□□□□ -1.83
MSX1P28360 PRSS3P4-201ENST00000453323 162 ntBASIC3.59□□□□□ -1.83
MSX1P28360 AL133162.1-201ENST00000463228 453 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 164.2 ms