Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC009161.2-201ENST00000624626 138 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 RNU6-1214P-201ENST00000363650 109 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 RNU4-41P-201ENST00000364426 143 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 RNU6-282P-201ENST00000365357 103 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 RNU6-245P-201ENST00000384020 107 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.26□□□□□ -2.37
HLA-DMBP28068 RNU1-117P-201ENST00000517041 158 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 MTND4LP26-201ENST00000518144 282 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 AP003716.2-201ENST00000528260 108 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 AC131055.1-201ENST00000584626 316 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 SNORD11B-201ENST00000607707 90 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.26□□□□□ -2.37
HLA-DMBP28068 AC137590.2-201ENST00000619709 240 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 AC134026.1-201ENST00000623249 2239 ntBASIC0.26□□□□□ -2.37
HLA-DMBP28068 ZNF204P-201ENST00000416749 2397 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 Y_RNA.123-201ENST00000363338 102 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.25□□□□□ -2.37
HLA-DMBP28068 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.25□□□□□ -2.37
HLA-DMBP28068 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 RNA5SP511-201ENST00000410487 115 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.25□□□□□ -2.37
HLA-DMBP28068 RPL23AP50-201ENST00000434149 455 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 USP9YP29-201ENST00000445112 563 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 AC093850.1-201ENST00000454121 251 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 AL356010.1-201ENST00000456364 102 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 U8.21-201ENST00000459536 136 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.25□□□□□ -2.37
HLA-DMBP28068 RNU6-1110P-201ENST00000516462 101 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 RNU7-28P-201ENST00000516759 62 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 AC087854.1-201ENST00000519706 414 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
HLA-DMBP28068 AP002963.1-201ENST00000530590 184 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.25□□□□□ -2.37
HLA-DMBP28068 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
HLA-DMBP28068 SCOCP1-201ENST00000554676 349 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.25□□□□□ -2.37
HLA-DMBP28068 MIR5583-1-201ENST00000580941 59 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 AC011458.1-201ENST00000604034 617 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 AC093913.1-201ENST00000614178 329 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 MIR6516-201ENST00000630554 81 ntBASIC0.25□□□□□ -2.37
HLA-DMBP28068 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.25□□□□□ -2.37
HLA-DMBP28068 RNA5SP264-201ENST00000363115 107 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 SNORD115-8-201ENST00000363856 82 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 SNORD115-38-201ENST00000365037 82 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
HLA-DMBP28068 RNU6-456P-201ENST00000384493 107 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 RNU1-119P-201ENST00000391122 165 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 AL049545.1-201ENST00000401856 572 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 AC133104.1-201ENST00000429100 218 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.24□□□□□ -2.37
HLA-DMBP28068 AL162725.1-201ENST00000435405 301 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 AL033528.1-201ENST00000453780 140 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 RNU7-180P-201ENST00000459240 63 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.24□□□□□ -2.37
HLA-DMBP28068 SNORA14.1-201ENST00000516113 141 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 SNORD111.1-201ENST00000516421 86 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 AC109810.1-201ENST00000534066 224 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 AK6P2-201ENST00000549020 471 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 HIF1AP1-201ENST00000553642 175 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 MIR3192-201ENST00000584920 77 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 AL117336.2-201ENST00000602435 335 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 Z83818.1-201ENST00000603584 150 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 AC064836.2-201ENST00000609491 462 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 OR5AK4P-201ENST00000635912 903 ntBASIC0.24□□□□□ -2.37
HLA-DMBP28068 MIRLET7C-201ENST00000362160 84 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 MIR450B-201ENST00000401182 78 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC244098.3-201ENST00000424803 96 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 MTCYBP10-201ENST00000424905 650 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC005534.2-201ENST00000431047 433 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC104332.1-201ENST00000440471 797 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC093019.1-201ENST00000443135 252 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 MTCO1P19-201ENST00000443487 500 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 SNORD11.1-201ENST00000459482 85 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC091133.4-201ENST00000511142 308 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 RNA5SP54-201ENST00000516951 92 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 MIR4438-201ENST00000585271 93 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AC234772.3-201ENST00000602277 528 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 SEPT14P17-201ENST00000617978 177 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 MIR6079-201ENST00000635807 62 ntBASIC0.23□□□□□ -2.37
HLA-DMBP28068 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.23□□□□□ -2.37
HLA-DMBP28068 MTND5P16-201ENST00000460269 1703 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU6-1266P-201ENST00000362794 105 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 Y_RNA.100-201ENST00000363141 102 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU6-181P-201ENST00000363225 107 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU6-1317P-201ENST00000364582 104 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 Y_RNA.265-201ENST00000364677 108 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU6-784P-201ENST00000384330 106 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU6-517P-201ENST00000384362 110 ntBASIC0.22□□□□□ -2.37
HLA-DMBP28068 RNU6-1067P-201ENST00000384752 107 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms