Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 XACT-201ENST00000468762 497 ntTSL 5 BASIC-1.23□□□□□ -2.61
HMGA1P17096 AC112206.4-201ENST00000515142 405 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 AC040926.1-201ENST00000530195 238 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 AC138915.2-201ENST00000569776 97 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 AC121334.2-201ENST00000605387 271 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 AC090186.1-201ENST00000605991 572 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 AC091304.9-201ENST00000612091 226 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 uc_338.19-201ENST00000616808 99 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 FRG1KP-201ENST00000623592 341 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 AC006927.4-201ENST00000639187 543 ntBASIC-1.23□□□□□ -2.61
HMGA1P17096 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC-1.24□□□□□ -2.61
HMGA1P17096 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC-1.24□□□□□ -2.61
HMGA1P17096 MIR148A-201ENST00000362215 68 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 RNU6-378P-201ENST00000384324 107 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 MIR217-201ENST00000384817 110 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 MIR1185-2-201ENST00000408687 86 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 MIR1302-7-201ENST00000408841 72 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 RNA5SP201-201ENST00000410316 124 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 RNU6-613P-201ENST00000410412 108 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 MTCYBP42-201ENST00000444653 1130 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 MTCO3P9-201ENST00000506989 781 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 AP002004.2-201ENST00000531656 154 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 CR383656.4-201ENST00000546909 122 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 AC087883.1-201ENST00000551882 391 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 AC090897.1-201ENST00000580909 226 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 MIR4499-201ENST00000584834 69 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC-1.24□□□□□ -2.61
HMGA1P17096 AL445264.1-201ENST00000621719 171 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 AL008636.1-201ENST00000625038 1018 ntBASIC-1.24□□□□□ -2.61
HMGA1P17096 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC-1.25□□□□□ -2.61
HMGA1P17096 AC005592.1-201ENST00000566527 1640 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 Y_RNA.376-201ENST00000365638 108 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 MIR501-201ENST00000390204 84 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 AL500527.2-201ENST00000454105 95 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-1.25□□□□□ -2.61
HMGA1P17096 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-1.25□□□□□ -2.61
HMGA1P17096 SNORA18.7-201ENST00000516910 131 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 RNU6-64P-201ENST00000517119 105 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 SCARNA11.2-201ENST00000517183 154 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC-1.25□□□□□ -2.61
HMGA1P17096 Y_RNA.757-201ENST00000578934 114 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 MIR3923-201ENST00000579521 83 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 AC133794.1-201ENST00000602731 914 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 AC022893.3-201ENST00000607665 437 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 AC124016.2-201ENST00000610058 665 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-1.25□□□□□ -2.61
HMGA1P17096 Y_RNA.25-201ENST00000362528 102 ntBASIC-1.26□□□□□ -2.61
HMGA1P17096 RNU6-527P-201ENST00000363425 104 ntBASIC-1.26□□□□□ -2.61
HMGA1P17096 SNORD32A-201ENST00000364805 84 ntBASIC-1.26□□□□□ -2.61
HMGA1P17096 SUMO2P5-201ENST00000506790 245 ntBASIC-1.26□□□□□ -2.61
HMGA1P17096 RNU6-1116P-201ENST00000517269 99 ntBASIC-1.26□□□□□ -2.61
HMGA1P17096 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-1.26□□□□□ -2.61
HMGA1P17096 VN1R87P-201ENST00000596706 487 ntBASIC-1.26□□□□□ -2.61
HMGA1P17096 Y_RNA.52-201ENST00000362760 96 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 RNU6-1322P-201ENST00000364309 107 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.27□□□□□ -2.61
HMGA1P17096 MIR1305-201ENST00000408300 86 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 AC092809.3-201ENST00000415453 231 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 RPL21P38-201ENST00000418090 167 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 AC244250.2-201ENST00000418731 148 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-1.27□□□□□ -2.61
HMGA1P17096 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC-1.27□□□□□ -2.61
HMGA1P17096 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC-1.27□□□□□ -2.61
HMGA1P17096 AL392103.1-201ENST00000447000 198 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 NDUFB1P2-201ENST00000449477 176 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-1.27□□□□□ -2.61
HMGA1P17096 RNU6-1291P-201ENST00000516591 104 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 RNA5SP169-201ENST00000517268 117 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC-1.27□□□□□ -2.61
HMGA1P17096 MIR3152-201ENST00000579801 74 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 MIR6828-201ENST00000636181 60 ntBASIC-1.27□□□□□ -2.61
HMGA1P17096 RNU6-1284P-201ENST00000363701 100 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 RNA5SP331-201ENST00000364986 107 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 RNU6-796P-201ENST00000391086 107 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 SNX3P1X-201ENST00000414887 175 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-1.28□□□□□ -2.61
HMGA1P17096 MIR2115-201ENST00000516657 100 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 MIR548AD-201ENST00000584780 82 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 AL138889.2-201ENST00000603883 242 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 Z99289.3-201ENST00000605586 594 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 AC245008.1-201ENST00000608123 476 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 ZNF204P-201ENST00000416749 2397 ntBASIC-1.28□□□□□ -2.61
HMGA1P17096 RNU4-36P-201ENST00000364294 144 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 RNU6-1126P-201ENST00000384002 107 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 Y_RNA.477-201ENST00000384352 108 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 AL355143.1-201ENST00000407101 841 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 MTCO1P5-201ENST00000433573 344 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 TPTE2P1-204ENST00000435256 593 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-1.29□□□□□ -2.62
HMGA1P17096 AC007547.1-201ENST00000462177 490 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 AC079395.1-201ENST00000510981 262 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 AC109479.2-201ENST00000517842 174 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 RPL21P9-201ENST00000556149 474 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 MIR4306-201ENST00000583390 91 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 MIR4293-201ENST00000584305 78 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 AP002802.2-201ENST00000605877 235 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 SNORD38B-202ENST00000625943 69 ntBASIC-1.29□□□□□ -2.62
HMGA1P17096 AC092104.1-201ENST00000497346 1441 ntBASIC-1.3□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 408.6 ms