Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MIR300-201ENST00000401138 83 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 RNU6-1050P-201ENST00000410388 107 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 AL139396.1-201ENST00000421137 167 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
CTDNEP1O95476 AP000870.1-201ENST00000472927 406 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 RPL7P42-201ENST00000481005 679 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 AC103851.1-201ENST00000506833 274 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 AC046134.1-201ENST00000514454 666 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 RNU6-1016P-201ENST00000516689 94 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.2□□□□□ -2.22
CTDNEP1O95476 MIR4498-201ENST00000577599 66 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 MIR5094-201ENST00000578766 85 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 MIR5701-3-201ENST00000578890 82 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.2□□□□□ -2.22
CTDNEP1O95476 MIR4273-201ENST00000582824 84 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 MIR5701-1-201ENST00000585138 82 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 AL355802.3-201ENST00000607571 545 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 AC083806.3-201ENST00000614016 455 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 MIR5701-2-201ENST00000615634 82 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 AC068205.3-201ENST00000636385 468 ntBASIC1.2□□□□□ -2.22
CTDNEP1O95476 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.2□□□□□ -2.22
CTDNEP1O95476 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.2□□□□□ -2.22
CTDNEP1O95476 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.2□□□□□ -2.22
CTDNEP1O95476 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.2□□□□□ -2.22
CTDNEP1O95476 ZNF299P-201ENST00000406845 1804 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.19□□□□□ -2.22
CTDNEP1O95476 RNU6-222P-201ENST00000362438 107 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 RNU6-862P-201ENST00000362804 105 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 Y_RNA.132-201ENST00000363421 102 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 RNU6-112P-201ENST00000363599 104 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 SNORA33-201ENST00000363664 130 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 Y_RNA.327-201ENST00000365201 102 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 RNU6-975P-201ENST00000384296 105 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 RNU6-331P-201ENST00000384724 107 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 MIR10B-201ENST00000385011 110 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 MIR586-201ENST00000385035 97 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 MIR153-2-201ENST00000385225 87 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 RNU6-159P-201ENST00000391080 106 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 AC074085.1-201ENST00000413598 418 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 AC016909.1-201ENST00000415916 166 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 RPS29P28-201ENST00000446439 141 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 MTND3P10-201ENST00000450967 341 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.19□□□□□ -2.22
CTDNEP1O95476 snoU13.9-201ENST00000458927 103 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.19□□□□□ -2.22
CTDNEP1O95476 HMGN1P12-201ENST00000499125 195 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.19□□□□□ -2.22
CTDNEP1O95476 AC025465.3-201ENST00000510570 311 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 RNU6-1041P-201ENST00000516254 102 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 SNORA31.17-201ENST00000516953 127 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 RNU6-1213P-201ENST00000517075 94 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 SNRPGP20-201ENST00000604477 205 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.19□□□□□ -2.22
CTDNEP1O95476 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.19□□□□□ -2.22
CTDNEP1O95476 AC009229.3-201ENST00000608056 282 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 AC022306.2-201ENST00000617563 647 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 AC008873.1-201ENST00000625051 138 ntBASIC1.19□□□□□ -2.22
CTDNEP1O95476 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.18□□□□□ -2.22
CTDNEP1O95476 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNU1-22P-201ENST00000363334 158 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNU6-1305P-201ENST00000364353 104 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNU4-38P-201ENST00000364472 129 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 SNORD87-201ENST00000364849 89 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNU6-439P-201ENST00000384188 106 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNU6-601P-201ENST00000384540 107 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 MIR548B-201ENST00000385247 97 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 AC138393.2-201ENST00000414742 246 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RPL21P111-201ENST00000418453 477 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 MTND3P23-201ENST00000431980 347 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 AC245047.4-201ENST00000433189 144 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.18□□□□□ -2.22
CTDNEP1O95476 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.18□□□□□ -2.22
CTDNEP1O95476 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.18□□□□□ -2.22
CTDNEP1O95476 ATP5J2P3-201ENST00000451550 258 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.18□□□□□ -2.22
CTDNEP1O95476 AC005908.1-201ENST00000468701 347 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 AC091179.3-201ENST00000474761 144 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNU6-120P-201ENST00000516077 103 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 SNORA25.14-201ENST00000516481 132 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 Y_RNA.691-201ENST00000516611 103 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNU6-344P-201ENST00000516635 111 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 SNORA20.3-201ENST00000516880 132 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNA5SP54-201ENST00000516951 92 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RNU1-117P-201ENST00000517041 158 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 AL590705.4-201ENST00000532209 134 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 MIR4753-201ENST00000585119 83 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 MIR6078-201ENST00000611069 100 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 AC126177.8-201ENST00000618339 1015 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.18□□□□□ -2.22
CTDNEP1O95476 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.18□□□□□ -2.22
CTDNEP1O95476 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.18□□□□□ -2.22
CTDNEP1O95476 Y_RNA.106-201ENST00000363189 100 ntBASIC1.17□□□□□ -2.22
CTDNEP1O95476 RNU6-727P-201ENST00000363592 107 ntBASIC1.17□□□□□ -2.22
CTDNEP1O95476 Y_RNA.166-201ENST00000363730 102 ntBASIC1.17□□□□□ -2.22
CTDNEP1O95476 Y_RNA.415-201ENST00000384012 112 ntBASIC1.17□□□□□ -2.22
CTDNEP1O95476 Y_RNA.482-201ENST00000384377 111 ntBASIC1.17□□□□□ -2.22
CTDNEP1O95476 RPL37P10-201ENST00000412884 288 ntBASIC1.17□□□□□ -2.22
CTDNEP1O95476 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms