Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.12□□□□□ -2.07
LMX1BO60663 Y_RNA.638-201ENST00000459374 113 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 RPS29P21-201ENST00000496272 170 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.12□□□□□ -2.07
LMX1BO60663 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.12□□□□□ -2.07
LMX1BO60663 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.12□□□□□ -2.07
LMX1BO60663 AC011373.1-201ENST00000607270 237 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 AL590240.4-201ENST00000616908 390 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 AC005562.2-201ENST00000618264 111 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.12□□□□□ -2.07
LMX1BO60663 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
LMX1BO60663 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.12□□□□□ -2.07
LMX1BO60663 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.11□□□□□ -2.07
LMX1BO60663 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.11□□□□□ -2.07
LMX1BO60663 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
LMX1BO60663 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 RNA5SP289-201ENST00000362332 137 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 Y_RNA.76-201ENST00000362931 109 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 RNU6-454P-201ENST00000364292 107 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 Y_RNA.269-201ENST00000364685 89 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 RNU6-326P-201ENST00000365480 107 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 SNORA18.2-201ENST00000383865 132 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 MIR548I3-201ENST00000408378 149 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 MIR548I1-201ENST00000408810 149 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 RNU6-651P-201ENST00000411040 105 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 AL139156.1-201ENST00000412785 841 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.11□□□□□ -2.07
LMX1BO60663 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.11□□□□□ -2.07
LMX1BO60663 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.11□□□□□ -2.07
LMX1BO60663 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.11□□□□□ -2.07
LMX1BO60663 AL139109.1-201ENST00000455491 297 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.11□□□□□ -2.07
LMX1BO60663 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.11□□□□□ -2.07
LMX1BO60663 RNU6-138P-201ENST00000515952 107 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 RNU6-344P-201ENST00000516635 111 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 CYCSP23-201ENST00000519781 313 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.11□□□□□ -2.07
LMX1BO60663 AC130289.1-201ENST00000577321 73 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 MIR4765-201ENST00000585007 77 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 AC005176.2-201ENST00000596933 147 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 AC008739.2-201ENST00000597006 317 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.11□□□□□ -2.07
LMX1BO60663 AC008749.1-201ENST00000597650 306 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 RPL30P11-203ENST00000598995 310 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 SNRPGP20-201ENST00000604477 205 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 AC011921.3-201ENST00000605540 361 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 TCL6_2.1-201ENST00000615162 119 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 U2.14-201ENST00000615943 113 ntBASIC2.11□□□□□ -2.07
LMX1BO60663 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.11□□□□□ -2.07
LMX1BO60663 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
LMX1BO60663 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
LMX1BO60663 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
LMX1BO60663 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
LMX1BO60663 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.1□□□□□ -2.07
LMX1BO60663 Y_RNA.136-201ENST00000363444 102 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 SNORD87-201ENST00000364849 89 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 RNU6-1083P-201ENST00000384022 107 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 Y_RNA.569-201ENST00000384749 103 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 MIR518C-201ENST00000384822 101 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 AC009310.1-201ENST00000414414 451 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.1□□□□□ -2.07
LMX1BO60663 AC003685.2-201ENST00000422795 395 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 UQCRBP2-201ENST00000447827 297 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 RNU6-625P-201ENST00000459412 107 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 RNU2-44P-201ENST00000516795 194 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 RNU7-110P-201ENST00000516891 62 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 RNA5SP402-201ENST00000517148 110 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 IGKV3-31-201ENST00000523109 329 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.1□□□□□ -2.07
LMX1BO60663 AC026470.2-201ENST00000561492 181 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.1□□□□□ -2.07
LMX1BO60663 AC103810.1-201ENST00000579873 453 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 MIR4648-201ENST00000580107 72 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.1□□□□□ -2.07
LMX1BO60663 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.1□□□□□ -2.07
LMX1BO60663 AC004467.1-201ENST00000615678 330 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
LMX1BO60663 AC091932.3-201ENST00000624223 323 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 FO624990.1-201ENST00000636373 85 ntBASIC2.1□□□□□ -2.07
LMX1BO60663 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
LMX1BO60663 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.09□□□□□ -2.07
LMX1BO60663 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.09□□□□□ -2.07
LMX1BO60663 RNU5F-3P-201ENST00000363767 117 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 SNORA68.1-201ENST00000364537 132 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 RNU6-200P-201ENST00000364743 107 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 Y_RNA.498-201ENST00000384460 102 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 MIR627-201ENST00000384979 97 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 AL033519.2-201ENST00000403958 392 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.09□□□□□ -2.07
LMX1BO60663 RPL30P4-201ENST00000429309 333 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 MICF-203ENST00000432679 129 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 MTCO1P5-201ENST00000433573 344 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 AC009237.7-201ENST00000447357 229 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.09□□□□□ -2.07
LMX1BO60663 RN7SL636P-201ENST00000497504 294 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 RNU2-31P-201ENST00000516954 155 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 RN7SKP40-201ENST00000517211 242 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms