Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.29□□□□□ -2.2
MSH4O15457 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.29□□□□□ -2.2
MSH4O15457 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.29□□□□□ -2.2
MSH4O15457 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.29□□□□□ -2.2
MSH4O15457 AC084782.3-201ENST00000612282 578 ntBASIC1.29□□□□□ -2.2
MSH4O15457 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.29□□□□□ -2.2
MSH4O15457 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
MSH4O15457 RNU1-22P-201ENST00000363334 158 ntBASIC1.28□□□□□ -2.2
MSH4O15457 Y_RNA.287-201ENST00000364853 94 ntBASIC1.28□□□□□ -2.2
MSH4O15457 SNORD1A-201ENST00000364968 72 ntBASIC1.28□□□□□ -2.2
MSH4O15457 RNU6-831P-201ENST00000384548 107 ntBASIC1.28□□□□□ -2.2
MSH4O15457 Y_RNA.573-201ENST00000384763 105 ntBASIC1.28□□□□□ -2.2
MSH4O15457 RNA5SP323-201ENST00000391094 133 ntBASIC1.28□□□□□ -2.2
MSH4O15457 Y_RNA.619-201ENST00000410951 90 ntBASIC1.28□□□□□ -2.2
MSH4O15457 FCF1P9-201ENST00000412546 282 ntBASIC1.28□□□□□ -2.2
MSH4O15457 AC016909.1-201ENST00000415916 166 ntBASIC1.28□□□□□ -2.2
MSH4O15457 AC008134.1-201ENST00000420943 193 ntBASIC1.28□□□□□ -2.2
MSH4O15457 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.28□□□□□ -2.2
MSH4O15457 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.28□□□□□ -2.2
MSH4O15457 RNU6-1088P-201ENST00000516850 104 ntBASIC1.28□□□□□ -2.2
MSH4O15457 RNA5SP102-201ENST00000516865 106 ntBASIC1.28□□□□□ -2.2
MSH4O15457 RNU6-1314P-201ENST00000517139 104 ntBASIC1.28□□□□□ -2.2
MSH4O15457 AC025647.1-201ENST00000517879 253 ntBASIC1.28□□□□□ -2.2
MSH4O15457 AC027288.2-201ENST00000553028 243 ntBASIC1.28□□□□□ -2.2
MSH4O15457 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.28□□□□□ -2.2
MSH4O15457 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.28□□□□□ -2.2
MSH4O15457 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.28□□□□□ -2.2
MSH4O15457 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.28□□□□□ -2.2
MSH4O15457 Y_RNA.86-201ENST00000363020 111 ntBASIC1.27□□□□□ -2.21
MSH4O15457 RNU6-873P-201ENST00000363833 107 ntBASIC1.27□□□□□ -2.21
MSH4O15457 RNU6-541P-201ENST00000384709 110 ntBASIC1.27□□□□□ -2.21
MSH4O15457 RNA5SP467-201ENST00000391274 118 ntBASIC1.27□□□□□ -2.21
MSH4O15457 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
MSH4O15457 AL161935.2-201ENST00000414627 60 ntBASIC1.27□□□□□ -2.21
MSH4O15457 AC009161.1-201ENST00000417306 376 ntBASIC1.27□□□□□ -2.21
MSH4O15457 RPL30P16-201ENST00000419341 429 ntBASIC1.27□□□□□ -2.21
MSH4O15457 MTATP6P13-201ENST00000438531 667 ntBASIC1.27□□□□□ -2.21
MSH4O15457 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.27□□□□□ -2.21
MSH4O15457 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.27□□□□□ -2.21
MSH4O15457 RNU6-221P-201ENST00000459541 99 ntBASIC1.27□□□□□ -2.21
MSH4O15457 RPL30P10-201ENST00000488148 337 ntBASIC1.27□□□□□ -2.21
MSH4O15457 AC079140.2-201ENST00000506193 142 ntBASIC1.27□□□□□ -2.21
MSH4O15457 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.27□□□□□ -2.21
MSH4O15457 RNU6-902P-201ENST00000517212 91 ntBASIC1.27□□□□□ -2.21
MSH4O15457 AC019176.1-201ENST00000518519 225 ntBASIC1.27□□□□□ -2.21
MSH4O15457 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.27□□□□□ -2.21
MSH4O15457 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.27□□□□□ -2.21
MSH4O15457 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.27□□□□□ -2.21
MSH4O15457 MIR4709-201ENST00000577272 72 ntBASIC1.27□□□□□ -2.21
MSH4O15457 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.27□□□□□ -2.21
MSH4O15457 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.27□□□□□ -2.21
MSH4O15457 AL161722.3-201ENST00000605789 2983 ntBASIC1.26□□□□□ -2.21
MSH4O15457 MTND4P12-201ENST00000498999 1377 ntBASIC1.26□□□□□ -2.21
MSH4O15457 SNORD33-201ENST00000362761 85 ntBASIC1.26□□□□□ -2.21
MSH4O15457 SNORD87-201ENST00000364849 89 ntBASIC1.26□□□□□ -2.21
MSH4O15457 RNU6-1240P-201ENST00000365155 104 ntBASIC1.26□□□□□ -2.21
MSH4O15457 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH4O15457 MRPL35P1-201ENST00000404272 572 ntBASIC1.26□□□□□ -2.21
MSH4O15457 MIR1277-201ENST00000408536 78 ntBASIC1.26□□□□□ -2.21
MSH4O15457 Y_RNA.599-201ENST00000410489 109 ntBASIC1.26□□□□□ -2.21
MSH4O15457 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH4O15457 AL591704.2-201ENST00000421658 181 ntBASIC1.26□□□□□ -2.21
MSH4O15457 SDAD1P3-201ENST00000427380 333 ntBASIC1.26□□□□□ -2.21
MSH4O15457 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH4O15457 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH4O15457 RNU7-34P-201ENST00000459394 64 ntBASIC1.26□□□□□ -2.21
MSH4O15457 HMGN1P12-201ENST00000499125 195 ntBASIC1.26□□□□□ -2.21
MSH4O15457 RNU4-49P-201ENST00000516080 140 ntBASIC1.26□□□□□ -2.21
MSH4O15457 RNA5SP454-201ENST00000517231 127 ntBASIC1.26□□□□□ -2.21
MSH4O15457 AC024995.1-201ENST00000523014 93 ntBASIC1.26□□□□□ -2.21
MSH4O15457 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH4O15457 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH4O15457 AC008269.2-201ENST00000561915 1105 ntBASIC1.26□□□□□ -2.21
MSH4O15457 7SK.7-201ENST00000603504 247 ntBASIC1.26□□□□□ -2.21
MSH4O15457 AC080078.2-201ENST00000603766 501 ntBASIC1.26□□□□□ -2.21
MSH4O15457 AC002553.4-201ENST00000616896 331 ntBASIC1.26□□□□□ -2.21
MSH4O15457 MTND5P35-201ENST00000557537 1720 ntBASIC1.26□□□□□ -2.21
MSH4O15457 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
MSH4O15457 RNU6-727P-201ENST00000363592 107 ntBASIC1.25□□□□□ -2.21
MSH4O15457 RNU6-137P-201ENST00000363680 108 ntBASIC1.25□□□□□ -2.21
MSH4O15457 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
MSH4O15457 EIF1P1-201ENST00000421436 341 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AC027119.1-201ENST00000440877 241 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AC082651.2-201ENST00000496833 166 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AC103851.1-201ENST00000506833 274 ntBASIC1.25□□□□□ -2.21
MSH4O15457 RNU6-864P-201ENST00000516256 108 ntBASIC1.25□□□□□ -2.21
MSH4O15457 MTND4LP26-201ENST00000518144 282 ntBASIC1.25□□□□□ -2.21
MSH4O15457 UBL5P4-201ENST00000562584 236 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AC015688.6-201ENST00000577737 104 ntBASIC1.25□□□□□ -2.21
MSH4O15457 MIR5696-201ENST00000578474 85 ntBASIC1.25□□□□□ -2.21
MSH4O15457 MIR3937-201ENST00000580135 106 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AP003465.2-201ENST00000602571 373 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AC093913.1-201ENST00000614178 329 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AL121890.5-201ENST00000620848 304 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AL133216.2-202ENST00000634512 349 ntBASIC1.25□□□□□ -2.21
MSH4O15457 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.24□□□□□ -2.21
MSH4O15457 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
MSH4O15457 MIR26B-201ENST00000362251 77 ntBASIC1.24□□□□□ -2.21
MSH4O15457 Y_RNA.157-201ENST00000363638 102 ntBASIC1.24□□□□□ -2.21
MSH4O15457 U3.8-201ENST00000363675 217 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms