Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXN3O00409 MTND5P6-201ENST00000422338 1798 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
FOXN3O00409 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXN3O00409 Y_RNA.16-201ENST00000362421 102 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 Y_RNA.183-201ENST00000363882 113 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 SNORA3A-201ENST00000364113 130 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 Y_RNA.350-201ENST00000365409 98 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 SNORD78.2-201ENST00000391076 69 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 MIR1262-201ENST00000408276 93 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 EDDM3CP-201ENST00000415977 425 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 AC016717.1-201ENST00000448918 286 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.59□□□□□ -1.99
FOXN3O00409 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.59□□□□□ -1.99
FOXN3O00409 Y_RNA.673-201ENST00000516306 88 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 RNU6-344P-201ENST00000516635 111 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 RN7SKP49-201ENST00000516675 260 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 Y_RNA.713-201ENST00000517013 96 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 IGLV3-17-201ENST00000519099 244 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 CYCSP23-201ENST00000519781 313 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 NDUFA5P6-201ENST00000542110 379 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 AC121758.2-201ENST00000553271 193 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 MIR4300-201ENST00000581016 96 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 MIR5694-201ENST00000581190 76 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 MIR4672-201ENST00000583126 81 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 AL357075.2-201ENST00000614906 189 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 AC240442.1-201ENST00000616055 283 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 AC012640.5-201ENST00000623897 319 ntBASIC2.59□□□□□ -1.99
FOXN3O00409 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.59□□□□□ -2
FOXN3O00409 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
FOXN3O00409 Y_RNA.14-201ENST00000362415 103 ntBASIC2.58□□□□□ -2
FOXN3O00409 Y_RNA.84-201ENST00000363011 104 ntBASIC2.58□□□□□ -2
FOXN3O00409 snoU2_19.2-201ENST00000363024 80 ntBASIC2.58□□□□□ -2
FOXN3O00409 RNU6-418P-201ENST00000384035 107 ntBASIC2.58□□□□□ -2
FOXN3O00409 RNU6-1145P-201ENST00000384246 107 ntBASIC2.58□□□□□ -2
FOXN3O00409 AC009963.1-201ENST00000417265 157 ntBASIC2.58□□□□□ -2
FOXN3O00409 AC139712.2-201ENST00000424302 339 ntBASIC2.58□□□□□ -2
FOXN3O00409 HMGB3P17-201ENST00000504195 649 ntBASIC2.58□□□□□ -2
FOXN3O00409 AC026436.1-201ENST00000510537 270 ntBASIC2.58□□□□□ -2
FOXN3O00409 AC025465.3-201ENST00000510570 311 ntBASIC2.58□□□□□ -2
FOXN3O00409 RNU6-1012P-201ENST00000516606 109 ntBASIC2.58□□□□□ -2
FOXN3O00409 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.58□□□□□ -2
FOXN3O00409 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.58□□□□□ -2
FOXN3O00409 AC233702.2-202ENST00000562547 291 ntBASIC2.58□□□□□ -2
FOXN3O00409 AC010900.2-201ENST00000604508 210 ntBASIC2.58□□□□□ -2
FOXN3O00409 AC067747.1-201ENST00000608026 250 ntBASIC2.58□□□□□ -2
FOXN3O00409 AC013412.1-201ENST00000610687 192 ntBASIC2.58□□□□□ -2
FOXN3O00409 SDR42E1P4-201ENST00000620894 481 ntBASIC2.58□□□□□ -2
FOXN3O00409 AC068205.3-201ENST00000636385 468 ntBASIC2.58□□□□□ -2
FOXN3O00409 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
FOXN3O00409 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
FOXN3O00409 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
FOXN3O00409 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
FOXN3O00409 RNU1-51P-201ENST00000365345 176 ntBASIC2.57□□□□□ -2
FOXN3O00409 Y_RNA.489-201ENST00000384410 101 ntBASIC2.57□□□□□ -2
FOXN3O00409 RNU6-102P-201ENST00000384485 104 ntBASIC2.57□□□□□ -2
FOXN3O00409 MIR300-201ENST00000401138 83 ntBASIC2.57□□□□□ -2
FOXN3O00409 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.57□□□□□ -2
FOXN3O00409 RNA5SP504-201ENST00000410676 117 ntBASIC2.57□□□□□ -2
FOXN3O00409 RNA5SP270-201ENST00000411361 118 ntBASIC2.57□□□□□ -2
FOXN3O00409 AC007395.1-201ENST00000451333 677 ntBASIC2.57□□□□□ -2
FOXN3O00409 HMGN2P9-201ENST00000476875 229 ntBASIC2.57□□□□□ -2
FOXN3O00409 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.57□□□□□ -2
FOXN3O00409 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.57□□□□□ -2
FOXN3O00409 RNU6-794P-201ENST00000517261 64 ntBASIC2.57□□□□□ -2
FOXN3O00409 DEFB108E-201ENST00000524692 240 ntBASIC2.57□□□□□ -2
FOXN3O00409 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.57□□□□□ -2
FOXN3O00409 AC012433.1-201ENST00000588916 398 ntBASIC2.57□□□□□ -2
FOXN3O00409 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.57□□□□□ -2
FOXN3O00409 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.57□□□□□ -2
FOXN3O00409 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
FOXN3O00409 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXN3O00409 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
FOXN3O00409 SNORD27-201ENST00000363981 72 ntBASIC2.56□□□□□ -2
FOXN3O00409 Y_RNA.237-201ENST00000364439 102 ntBASIC2.56□□□□□ -2
FOXN3O00409 SNORD14D-201ENST00000384390 87 ntBASIC2.56□□□□□ -2
FOXN3O00409 RNU6-1203P-201ENST00000410703 110 ntBASIC2.56□□□□□ -2
FOXN3O00409 SRIP3-201ENST00000413200 219 ntBASIC2.56□□□□□ -2
FOXN3O00409 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.56□□□□□ -2
FOXN3O00409 MTND4LP30-201ENST00000454092 297 ntBASIC2.56□□□□□ -2
FOXN3O00409 RPL39P38-201ENST00000467018 153 ntBASIC2.56□□□□□ -2
FOXN3O00409 AC114982.1-201ENST00000469402 321 ntBASIC2.56□□□□□ -2
FOXN3O00409 SNORA40.9-201ENST00000515895 93 ntBASIC2.56□□□□□ -2
FOXN3O00409 SCARNA24.2-201ENST00000516968 130 ntBASIC2.56□□□□□ -2
FOXN3O00409 Y_RNA.772-201ENST00000606692 102 ntBASIC2.56□□□□□ -2
FOXN3O00409 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.56□□□□□ -2
FOXN3O00409 AP001282.2-201ENST00000616149 309 ntBASIC2.56□□□□□ -2
FOXN3O00409 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXN3O00409 AC016717.2-201ENST00000609089 5141 ntBASIC2.55□□□□□ -2
FOXN3O00409 Y_RNA.54-201ENST00000362766 105 ntBASIC2.55□□□□□ -2
FOXN3O00409 SNORD113-8-201ENST00000363497 74 ntBASIC2.55□□□□□ -2
FOXN3O00409 Y_RNA.498-201ENST00000384460 102 ntBASIC2.55□□□□□ -2
FOXN3O00409 SNORD23.1-201ENST00000408212 104 ntBASIC2.55□□□□□ -2
FOXN3O00409 RNU4-30P-201ENST00000410245 143 ntBASIC2.55□□□□□ -2
FOXN3O00409 AC123900.1-201ENST00000420390 96 ntBASIC2.55□□□□□ -2
FOXN3O00409 AC074290.1-201ENST00000448883 135 ntBASIC2.55□□□□□ -2
FOXN3O00409 AC016925.1-201ENST00000458303 298 ntBASIC2.55□□□□□ -2
FOXN3O00409 RNU7-57P-201ENST00000459540 60 ntBASIC2.55□□□□□ -2
FOXN3O00409 AP005660.1-201ENST00000522972 293 ntBASIC2.55□□□□□ -2
FOXN3O00409 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms