Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.288-201ENST00000364854 92 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 SNORA27.3-201ENST00000364937 134 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 Y_RNA.416-201ENST00000384014 113 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 RNU2-3P-201ENST00000410144 191 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 AC244670.1-201ENST00000436879 112 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 RNU7-59P-201ENST00000459101 61 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 AC007547.1-201ENST00000462177 490 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 AC091885.1-201ENST00000506658 268 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 Y_RNA.666-201ENST00000516187 112 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 AP001189.2-201ENST00000527320 189 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 AC115989.2-201ENST00000578640 563 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 AC020891.4-201ENST00000605745 93 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 AC132825.7-201ENST00000638744 335 ntBASIC-1.19□□□□□ -2.6
CCDC88BA6NC98 AC092104.1-201ENST00000497346 1441 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 RNU6-1322P-201ENST00000364309 107 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 RNA5SP205-201ENST00000364653 136 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 RNU6-673P-201ENST00000365084 104 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 RNU6-10P-201ENST00000384036 107 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 RNU6-975P-201ENST00000384296 105 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 RNU6-15P-201ENST00000384534 107 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 MIR1302-7-201ENST00000408841 72 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 RNU7-94P-201ENST00000459576 63 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 AC016632.1-201ENST00000503994 196 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 SCARNA11.2-201ENST00000517183 154 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 AC008608.1-201ENST00000603910 127 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 MIR15A-201ENST00000607334 83 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 AC124016.2-201ENST00000610058 665 ntBASIC-1.2□□□□□ -2.6
CCDC88BA6NC98 RNU6-1284P-201ENST00000363701 100 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 RNU6-613P-201ENST00000410412 108 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 RNU6-1245P-201ENST00000411130 106 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 MLLT10P1-201ENST00000418346 262 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 AC098592.1-201ENST00000419352 333 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 AC010424.1-201ENST00000506336 297 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 MIR4752-201ENST00000579672 72 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 AL138889.2-201ENST00000603883 242 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 AC010999.1-201ENST00000611856 324 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 MIR4320-201ENST00000636981 65 ntBASIC-1.21□□□□□ -2.6
CCDC88BA6NC98 SNORA72.1-201ENST00000363485 129 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 RNU6-364P-201ENST00000384387 107 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 AL953862.1-201ENST00000423016 168 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 MTCO1P5-201ENST00000433573 344 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 NDUFB1P2-201ENST00000449477 176 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 RNU7-136P-201ENST00000458819 69 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 AC007215.1-201ENST00000464893 276 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 CR383656.4-201ENST00000546909 122 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 MIR378F-201ENST00000578143 78 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 MIR4293-201ENST00000584305 78 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 AL158042.1-201ENST00000605338 460 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 AC091304.9-201ENST00000612091 226 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 RMST_7.1-201ENST00000621935 268 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 AC112487.2-201ENST00000637950 304 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 AC005592.1-201ENST00000566527 1640 ntBASIC-1.22□□□□□ -2.6
CCDC88BA6NC98 RNU6-447P-201ENST00000410293 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-1118P-201ENST00000410382 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-1076P-201ENST00000410397 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-355P-201ENST00000410427 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-791P-201ENST00000410467 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-705P-201ENST00000410601 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-1100P-201ENST00000410691 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-860P-201ENST00000410860 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-1217P-201ENST00000411276 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 RNU6-785P-201ENST00000411324 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 MTND1P31-201ENST00000449206 961 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 U6.90-201ENST00000614007 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 AC026585.1-201ENST00000619582 524 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 U6.70-201ENST00000620287 104 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 FRG1KP-201ENST00000623592 341 ntBASIC-1.23□□□□□ -2.61
CCDC88BA6NC98 AC010975.2-201ENST00000427781 588 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 SUMO1P2-201ENST00000452524 304 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 AP001372.4-201ENST00000524889 472 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 ZNF971P-201ENST00000562068 1249 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 AL590491.3-201ENST00000610731 82 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 MIR6738-201ENST00000619620 64 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 FGFR1OP2P1-201ENST00000395943 500 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 MIR891A-201ENST00000401237 79 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 RNU4-22P-201ENST00000411058 166 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 RNU6-469P-201ENST00000516253 101 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 RNU6-1116P-201ENST00000517269 99 ntBASIC-1.24□□□□□ -2.61
CCDC88BA6NC98 CDR1-202ENST00000625883 1485 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 RNU6-1240P-201ENST00000365155 104 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 MTND3P17-201ENST00000416968 344 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 AC090960.1-201ENST00000421072 306 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 AC079781.2-201ENST00000446424 169 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 RNU7-102P-201ENST00000458948 62 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 RNU7-140P-201ENST00000459546 60 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 AC112206.4-201ENST00000515142 405 ntBASIC-1.25□□□□□ -2.61
CCDC88BA6NC98 SCARNA17-201ENST00000516183 144 ntBASIC-1.25□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 142 ms