Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC103851.1-201ENST00000506833 274 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 AC046134.1-201ENST00000514454 666 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 RNA5SP384-201ENST00000516615 116 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 RNU1-54P-201ENST00000517181 120 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 RNA5SP454-201ENST00000517231 127 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 AC100830.2-201ENST00000581636 240 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 AC146944.4-201ENST00000602697 718 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 7SK.7-201ENST00000603504 247 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 AC137590.2-201ENST00000619709 240 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 AC130454.1-201ENST00000622948 401 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 SNORA43.4-201ENST00000629559 138 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.09□□□□□ -2.24
SHANK1Q9Y566 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
SHANK1Q9Y566 MIR373-201ENST00000362273 69 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RNU1-62P-201ENST00000362599 164 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RNU1-133P-201ENST00000364867 167 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 SNORA18.2-201ENST00000383865 132 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RNU6-842P-201ENST00000384269 107 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 SNORD116-29-201ENST00000384516 83 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 MIR218-1-201ENST00000384999 110 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AL133475.1-201ENST00000404414 305 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 MTND3P8-201ENST00000412909 339 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RBMX2P4-201ENST00000441256 376 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AL353572.1-201ENST00000442490 417 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC093019.1-201ENST00000443135 252 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AL035666.1-201ENST00000446195 348 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 HMGN2P9-201ENST00000476875 229 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RPL23AP75-201ENST00000491601 451 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RNA5SP54-201ENST00000516951 92 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AL078605.1-201ENST00000603529 500 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 BX322639.1-202ENST00000423987 2213 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RNU6-137P-201ENST00000363680 108 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 SNORD114-27-201ENST00000363766 70 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 MT-TL1-201ENST00000386347 75 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 SNORA75.4-201ENST00000391278 119 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC012306.1-201ENST00000423267 114 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC026782.1-201ENST00000512952 449 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RNU6-344P-201ENST00000516635 111 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 RNA5SP137-201ENST00000516833 135 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AC008749.1-201ENST00000597650 306 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 SNORD14A-201ENST00000606526 91 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 MIR1248-201ENST00000629190 106 ntBASIC1.08□□□□□ -2.24
SHANK1Q9Y566 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SHANK1Q9Y566 AL159152.1-201ENST00000635019 2587 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU6-862P-201ENST00000362804 105 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.72-201ENST00000362894 103 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.146-201ENST00000363549 102 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU6-767P-201ENST00000384132 107 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 SNORA70.7-201ENST00000384159 133 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU6-790P-201ENST00000384479 105 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU6-1235P-201ENST00000384559 107 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU6-95P-201ENST00000384697 107 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 MIR520E-201ENST00000384867 87 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU2-41P-201ENST00000410991 178 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RPS3AP52-201ENST00000435639 297 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AL357134.1-201ENST00000445848 426 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU6-498P-201ENST00000459468 107 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 SNRPGP7-201ENST00000469016 106 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 MTND5P5-201ENST00000503764 376 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU6-277P-201ENST00000516272 106 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AP000763.2-201ENST00000540641 163 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 UBL5P4-201ENST00000562584 236 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AC006600.1-201ENST00000572529 153 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AC090617.3-201ENST00000573670 475 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RN7SL793P-201ENST00000583259 296 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.07□□□□□ -2.24
SHANK1Q9Y566 PCGEM1.1-201ENST00000613431 131 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.07□□□□□ -2.24
SHANK1Q9Y566 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AP000648.3-201ENST00000623539 4507 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.142-201ENST00000363491 102 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 SNORD115-32-201ENST00000364079 82 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU6-1019P-201ENST00000364424 107 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.07□□□□□ -2.24
SHANK1Q9Y566 SNORD116-11-201ENST00000383882 92 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.433-201ENST00000384089 102 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 SNORA29-201ENST00000384183 140 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AL445305.1-201ENST00000432577 575 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AC011406.1-201ENST00000512440 370 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 RNU7-175P-201ENST00000515915 61 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.07□□□□□ -2.24
SHANK1Q9Y566 MTND4LP26-201ENST00000518144 282 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.07□□□□□ -2.24
SHANK1Q9Y566 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms