Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 Y_RNA.405-201ENST00000383979 100 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.451-201ENST00000384200 100 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 RNU6-17P-201ENST00000384245 107 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 RNU6-18P-201ENST00000384527 107 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.524-201ENST00000384564 100 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.561-201ENST00000384694 100 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 AC007098.1-201ENST00000420122 367 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.49□□□□□ -2.17
LHX3Q9UBR4 RPS3AP52-201ENST00000435639 297 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 AC069257.2-201ENST00000441819 155 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 FGF7P6-202ENST00000451282 293 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 AC027575.1-201ENST00000481064 460 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 AC082651.2-201ENST00000496833 166 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 RNU7-175P-201ENST00000515915 61 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 SNORA31.24-201ENST00000517232 57 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 AL590705.4-201ENST00000532209 134 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 CBX3P8-201ENST00000532412 525 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 snoZ196.1-201ENST00000625269 89 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 ZNF299P-201ENST00000406845 1804 ntBASIC1.49□□□□□ -2.17
LHX3Q9UBR4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
LHX3Q9UBR4 CASC19-280ENST00000642102 1351 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
LHX3Q9UBR4 RNU1-62P-201ENST00000362599 164 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 RNU5F-3P-201ENST00000363767 117 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 RNU6-595P-201ENST00000363944 107 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 RNU6-280P-201ENST00000364145 104 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.248-201ENST00000364501 109 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 SNORD87-201ENST00000364849 89 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
LHX3Q9UBR4 MIR1253-201ENST00000408273 105 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 MIR548K-201ENST00000408406 116 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 MIR1267-201ENST00000408723 78 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 RNA5SP504-201ENST00000410676 117 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.48□□□□□ -2.17
LHX3Q9UBR4 AC074085.1-201ENST00000413598 418 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 FTH1P12-201ENST00000432137 551 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 AL603825.1-201ENST00000438481 80 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 RN7SKP210-201ENST00000459176 261 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 RNA5SP458-201ENST00000516188 119 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 RNA5SP481-201ENST00000516814 122 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.48□□□□□ -2.17
LHX3Q9UBR4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.48□□□□□ -2.17
LHX3Q9UBR4 MIR4285-201ENST00000581001 85 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 AC018462.2-201ENST00000605375 395 ntBASIC1.48□□□□□ -2.17
LHX3Q9UBR4 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.48□□□□□ -2.17
LHX3Q9UBR4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.48□□□□□ -2.17
LHX3Q9UBR4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.48□□□□□ -2.17
LHX3Q9UBR4 MTND4P12-201ENST00000498999 1377 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 MIR126-201ENST00000362291 85 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.2-201ENST00000362330 96 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.160-201ENST00000363677 92 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 SNORA63D-201ENST00000364359 132 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 SNORA72.2-201ENST00000365028 127 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 MIR515-2-201ENST00000384883 83 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 MIR515-1-201ENST00000384884 83 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 RNU6-159P-201ENST00000391080 106 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 HMGN2P34-201ENST00000437647 269 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 snoU13.9-201ENST00000458927 103 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 AC005908.1-201ENST00000468701 347 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 AP000870.1-201ENST00000472927 406 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 RPL26P26-201ENST00000480251 434 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 AC026782.1-201ENST00000512952 449 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 Y_RNA.670-201ENST00000516255 105 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 RNU6-1016P-201ENST00000516689 94 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 RNU7-30P-201ENST00000516835 62 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 RNA5SP437-201ENST00000517249 129 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 AC134698.4-201ENST00000523451 826 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.47□□□□□ -2.17
LHX3Q9UBR4 AL355802.3-201ENST00000607571 545 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.47□□□□□ -2.17
LHX3Q9UBR4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
LHX3Q9UBR4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.46□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.72-201ENST00000362894 103 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 RNU6-338P-201ENST00000383888 105 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.490-201ENST00000384413 102 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 RNU6-876P-201ENST00000391295 104 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.594-201ENST00000410373 140 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 RNU6-1050P-201ENST00000410388 107 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 BTF3P4-201ENST00000418852 495 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 AC008134.1-201ENST00000420943 193 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 USMG5P1-201ENST00000425964 177 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 JTBP1-201ENST00000441314 247 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.46□□□□□ -2.18
LHX3Q9UBR4 AC107399.1-201ENST00000451226 265 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.638-201ENST00000459374 113 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 RNU6-221P-201ENST00000459541 99 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 AC023790.1-201ENST00000482174 347 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.675-201ENST00000516389 149 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 AC025647.1-201ENST00000517879 253 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.46□□□□□ -2.18
LHX3Q9UBR4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.46□□□□□ -2.18
LHX3Q9UBR4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
LHX3Q9UBR4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.46□□□□□ -2.18
LHX3Q9UBR4 AP000648.3-201ENST00000623539 4507 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 RNU6-222P-201ENST00000362438 107 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 SNORA33-201ENST00000363664 130 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 RNU6-1240P-201ENST00000365155 104 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms