Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-873P-201ENST00000363833 107 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNU6-1019P-201ENST00000364424 107 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNU6-203P-201ENST00000384038 104 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNU6-159P-201ENST00000391080 106 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 AL356776.1-201ENST00000406574 447 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNU2-7P-201ENST00000410794 178 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 AP1B1P2-201ENST00000416196 106 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 MTCO3P29-201ENST00000432119 779 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 AC112492.4-201ENST00000456549 352 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNU1-123P-201ENST00000458950 160 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 AC018710.1-201ENST00000506509 158 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNU7-175P-201ENST00000515915 61 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNU6-358P-201ENST00000516564 75 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNA5SP437-201ENST00000517249 129 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 7SK.7-201ENST00000603504 247 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 AC069114.2-201ENST00000604699 304 ntBASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.54□□□□□ -2.16
VPS54Q9P1Q0 RNA5SP432-201ENST00000362480 116 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 SNORA33-201ENST00000363664 130 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 RNU6-595P-201ENST00000363944 107 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 RNU6-338P-201ENST00000383888 105 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 RNU6-245P-201ENST00000384020 107 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 MIR520A-201ENST00000384862 85 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 MIR548B-201ENST00000385247 97 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 ZNF299P-201ENST00000406845 1804 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 AL139396.1-201ENST00000421137 167 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 HSPE1P9-201ENST00000440046 311 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 SNORD5.1-201ENST00000458800 75 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 AC004223.1-201ENST00000479840 271 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 MTND4P12-201ENST00000498999 1377 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 AC025465.3-201ENST00000510570 311 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 RNA5SP458-201ENST00000516188 119 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 MTND4LP26-201ENST00000518144 282 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 AL590705.4-201ENST00000532209 134 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 CBX3P8-201ENST00000532412 525 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 AC068338.1-201ENST00000565567 176 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
VPS54Q9P1Q0 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
VPS54Q9P1Q0 RNU1-62P-201ENST00000362599 164 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 RNU6-414P-201ENST00000363705 104 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 RNU6-417P-201ENST00000384712 107 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 MIR548F5-201ENST00000408421 86 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 MTND3P8-201ENST00000412909 339 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 EBAG9P1-201ENST00000418955 543 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 HMGN2P34-201ENST00000437647 269 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 AC074290.1-201ENST00000448883 135 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 AP000870.1-201ENST00000472927 406 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 AC026782.1-201ENST00000512952 449 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 AK6P2-201ENST00000549020 471 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 AC011712.1-201ENST00000588959 234 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 AC060780.3-201ENST00000589464 80 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 SNORD11B-201ENST00000607707 90 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 snoZ196.1-201ENST00000625269 89 ntBASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.52□□□□□ -2.17
VPS54Q9P1Q0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 MIR378A-201ENST00000362177 66 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.415-201ENST00000384012 112 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 MIR548K-201ENST00000408406 116 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.619-201ENST00000410951 90 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 AC016909.1-201ENST00000415916 166 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 CST2P1-201ENST00000425770 87 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 snoU13.9-201ENST00000458927 103 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 AC091179.3-201ENST00000474761 144 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 RPL36AP21-201ENST00000490372 323 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 AC025647.1-201ENST00000517879 253 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 AC018462.2-201ENST00000605375 395 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 AL355802.3-201ENST00000607571 545 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 AL353149.1-201ENST00000610667 244 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 MIR7974-201ENST00000615835 79 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 AC008873.1-201ENST00000625051 138 ntBASIC1.51□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.2-201ENST00000362330 96 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 snoU2-30.2-201ENST00000362805 70 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 RNU6-137P-201ENST00000363680 108 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.287-201ENST00000364853 94 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 MIR10B-201ENST00000385011 110 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 MIR758-201ENST00000390227 88 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 RNU6-360P-201ENST00000390944 104 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 MIR1253-201ENST00000408273 105 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 Y_RNA.599-201ENST00000410489 109 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 AC074085.1-201ENST00000413598 418 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 RPS3AP52-201ENST00000435639 297 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 AC103851.1-201ENST00000506833 274 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 AC134698.4-201ENST00000523451 826 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 SNORA77B-201ENST00000578179 125 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 MZT1P2-201ENST00000604387 248 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 AL161722.3-201ENST00000605789 2983 ntBASIC1.5□□□□□ -2.17
VPS54Q9P1Q0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms