Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.66□□□□□ -1.98
DDX56Q9NY93 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.66□□□□□ -1.98
DDX56Q9NY93 RNU6-1041P-201ENST00000516254 102 ntBASIC2.66□□□□□ -1.98
DDX56Q9NY93 RNU6-1012P-201ENST00000516606 109 ntBASIC2.66□□□□□ -1.98
DDX56Q9NY93 AL353149.1-201ENST00000610667 244 ntBASIC2.66□□□□□ -1.98
DDX56Q9NY93 AC011476.5-201ENST00000615594 130 ntBASIC2.66□□□□□ -1.98
DDX56Q9NY93 MIR3674-201ENST00000636576 68 ntBASIC2.66□□□□□ -1.98
DDX56Q9NY93 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
DDX56Q9NY93 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
DDX56Q9NY93 Y_RNA.162-201ENST00000363683 102 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 SNORA25.6-201ENST00000364121 118 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 MIR515-2-201ENST00000384883 83 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 MIR515-1-201ENST00000384884 83 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 MIR128-1-201ENST00000384921 82 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.65□□□□□ -1.99
DDX56Q9NY93 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.65□□□□□ -1.99
DDX56Q9NY93 RNU6-408P-201ENST00000515910 100 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 RNU6-764P-201ENST00000516396 105 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 Y_RNA.713-201ENST00000517013 96 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 Y_RNA.721-201ENST00000517207 102 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 AC022616.4-201ENST00000522985 181 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.65□□□□□ -1.99
DDX56Q9NY93 MYL12BP1-201ENST00000569826 507 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 MIR4287-201ENST00000579398 78 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 MIR4659A-201ENST00000580269 81 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 AL360085.1-201ENST00000604713 532 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 ZNF702P-202ENST00000434269 1966 ntBASIC2.65□□□□□ -1.99
DDX56Q9NY93 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
DDX56Q9NY93 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
DDX56Q9NY93 MIR6073-201ENST00000352083 89 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 RNU4-50P-201ENST00000364361 141 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 Y_RNA.455-201ENST00000384230 98 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 Y_RNA.458-201ENST00000384240 102 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
DDX56Q9NY93 SNORA48.1-201ENST00000390879 135 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 SNORA48.2-201ENST00000390926 124 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 RAB28P5-201ENST00000427490 651 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 YWHAEP4-201ENST00000505390 198 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.64□□□□□ -1.99
DDX56Q9NY93 AL390123.1-201ENST00000603216 237 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 MIR6895-201ENST00000613497 78 ntBASIC2.64□□□□□ -1.99
DDX56Q9NY93 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
DDX56Q9NY93 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
DDX56Q9NY93 snoU2-30.2-201ENST00000362805 70 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 RNA5SP456-201ENST00000364002 114 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 SNORA72.2-201ENST00000365028 127 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 Y_RNA.471-201ENST00000384312 102 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 RNU6-738P-201ENST00000384531 106 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 AL158823.1-201ENST00000418441 478 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 HMGN2P34-201ENST00000437647 269 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.63□□□□□ -1.99
DDX56Q9NY93 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.63□□□□□ -1.99
DDX56Q9NY93 SNORD109B-201ENST00000458961 67 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 SNORD109A-201ENST00000459128 67 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 Y_RNA.715-201ENST00000517082 110 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX56Q9NY93 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX56Q9NY93 AC113195.1-201ENST00000579952 141 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 AL109918.3-201ENST00000603072 338 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 AL121655.1-201ENST00000605811 308 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 Y_RNA.772-201ENST00000606692 102 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 AC116312.1-201ENST00000606841 314 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX56Q9NY93 AC240442.1-201ENST00000616055 283 ntBASIC2.63□□□□□ -1.99
DDX56Q9NY93 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
DDX56Q9NY93 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
DDX56Q9NY93 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX56Q9NY93 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
DDX56Q9NY93 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
DDX56Q9NY93 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX56Q9NY93 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
DDX56Q9NY93 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
DDX56Q9NY93 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.62□□□□□ -1.99
DDX56Q9NY93 RNA5SP501-201ENST00000410990 112 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.62□□□□□ -1.99
DDX56Q9NY93 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.62□□□□□ -1.99
DDX56Q9NY93 CST2P1-201ENST00000425770 87 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 SUMO1P2-201ENST00000452524 304 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U8.20-201ENST00000459445 131 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 RN7SKP132-201ENST00000516001 208 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 RNU6-327P-201ENST00000516270 127 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 AC005034.5-201ENST00000604219 466 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 AC069114.2-201ENST00000604699 304 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 AC005000.2-201ENST00000605468 310 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.15-201ENST00000611544 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.16-201ENST00000613119 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.12-201ENST00000613778 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.20-201ENST00000613956 192 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.9-201ENST00000615427 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.11-201ENST00000616345 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.2-201ENST00000616535 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.3-201ENST00000617785 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.19-201ENST00000618602 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 RNU2-1-201ENST00000618664 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.6-201ENST00000619225 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.5-201ENST00000619465 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 U2.10-201ENST00000620268 191 ntBASIC2.62□□□□□ -1.99
DDX56Q9NY93 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
DDX56Q9NY93 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 251.7 ms