Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 SNORA22C-201ENST00000384614 134 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 COX6CP10-201ENST00000416832 224 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 FTH1P12-201ENST00000432137 551 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 RPL30P10-201ENST00000488148 337 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 SNORA25.14-201ENST00000516481 132 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 AC025647.1-201ENST00000517879 253 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 AK6P2-201ENST00000549020 471 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 TPRKBP2-201ENST00000565969 475 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 AC009033.1-201ENST00000624279 431 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 AC090617.10-201ENST00000624308 134 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 AL359697.1-201ENST00000624879 587 ntBASIC0.98□□□□□ -2.25
EXOSC4Q9NPD3 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 RNU4-24P-201ENST00000364565 139 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 RNU4-9P-201ENST00000364951 139 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 Y_RNA.530-201ENST00000384587 101 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 RNA5SP323-201ENST00000391094 133 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 RPL21P1-201ENST00000399532 476 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 MIR320B2-201ENST00000408479 138 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AC004965.1-201ENST00000413033 213 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AC069257.2-201ENST00000441819 155 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 RNU7-34P-201ENST00000459394 64 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 TRBVA-201ENST00000498804 316 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 RNU6-344P-201ENST00000516635 111 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 RNA5SP454-201ENST00000517231 127 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 RAB11AP2-201ENST00000545905 639 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 MIR4709-201ENST00000577272 72 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 MIR4524B-201ENST00000581569 115 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 MIR4295-201ENST00000585286 85 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AL929325.1-201ENST00000603096 117 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 AL365434.2-201ENST00000607979 234 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 MIR6078-201ENST00000611069 100 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 U6.108-201ENST00000637764 58 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 MTND5P35-201ENST00000557537 1720 ntBASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
EXOSC4Q9NPD3 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 MIR378A-201ENST00000362177 66 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 Y_RNA.140-201ENST00000363474 103 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-873P-201ENST00000363833 107 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 SNORA25.8-201ENST00000364831 128 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 Y_RNA.319-201ENST00000365138 92 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-1240P-201ENST00000365155 104 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 SNORD116-11-201ENST00000383882 92 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 Y_RNA.414-201ENST00000384011 101 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 Y_RNA.415-201ENST00000384012 112 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-541P-201ENST00000384709 110 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-482P-201ENST00000391068 107 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 ZNF885P-201ENST00000420174 1098 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 AL589823.1-201ENST00000429577 183 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 DYNLT3P2-201ENST00000442517 295 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 AC074290.1-201ENST00000448883 135 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 RPS26P45-201ENST00000471748 340 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 SRP72-202ENST00000504757 745 ntTSL 2 BASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 ACA59.1-201ENST00000515966 143 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-1146P-201ENST00000516282 102 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 RNA5SP54-201ENST00000516951 92 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 AC027288.2-201ENST00000553028 243 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 AC124303.1-201ENST00000605703 360 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 SNORD11B-201ENST00000607707 90 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 MIR6715A-201ENST00000615929 79 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 AC009248.2-201ENST00000619826 254 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 MTND4P12-201ENST00000498999 1377 ntBASIC0.96□□□□□ -2.26
EXOSC4Q9NPD3 SNORD33-201ENST00000362761 85 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 Y_RNA.135-201ENST00000363439 95 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-1059P-201ENST00000363752 98 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 SNORD115-8-201ENST00000363856 82 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 SNORD115-38-201ENST00000365037 82 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 Y_RNA.533-201ENST00000384596 114 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 AL356776.1-201ENST00000406574 447 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-1186P-201ENST00000410429 97 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-1148P-201ENST00000410992 104 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 AP1B1P2-201ENST00000416196 106 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 BTF3P4-201ENST00000418852 495 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 MTATP6P13-201ENST00000438531 667 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 RPS27P1-201ENST00000450552 247 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-221P-201ENST00000459541 99 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 SNORA31.10-201ENST00000516482 106 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 RNU6-1088P-201ENST00000516850 104 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 SUMO2P16-201ENST00000519475 264 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 FRG2DP-202ENST00000566967 323 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 AC104984.5-201ENST00000586878 94 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 AC022217.4-201ENST00000604389 163 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 AC080013.6-201ENST00000606185 215 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 AC103810.9-201ENST00000606688 112 ntBASIC0.95□□□□□ -2.26
EXOSC4Q9NPD3 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms