Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC007064.1-201ENST00000412238 351 ntBASIC2.73□□□□□ -1.97
NUP88Q99567 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.73□□□□□ -1.97
NUP88Q99567 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.73□□□□□ -1.97
NUP88Q99567 AC016925.1-201ENST00000458303 298 ntBASIC2.73□□□□□ -1.97
NUP88Q99567 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.73□□□□□ -1.97
NUP88Q99567 AC113195.1-201ENST00000579952 141 ntBASIC2.73□□□□□ -1.97
NUP88Q99567 AL031274.2-201ENST00000599419 203 ntBASIC2.73□□□□□ -1.97
NUP88Q99567 AC022202.1-201ENST00000613515 211 ntBASIC2.73□□□□□ -1.97
NUP88Q99567 AC130454.1-201ENST00000622948 401 ntBASIC2.73□□□□□ -1.97
NUP88Q99567 AC008873.1-201ENST00000625051 138 ntBASIC2.73□□□□□ -1.97
NUP88Q99567 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.73□□□□□ -1.97
NUP88Q99567 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
NUP88Q99567 U3.8-201ENST00000363675 217 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 Y_RNA.380-201ENST00000365663 111 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 Y_RNA.551-201ENST00000384661 102 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 MIR1252-201ENST00000408861 65 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 HMGN2P35-201ENST00000412164 270 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 EDDM3CP-201ENST00000415977 425 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 AC123900.1-201ENST00000420390 96 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 AC139712.2-201ENST00000424302 339 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 AC016717.1-201ENST00000448918 286 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 RNU7-57P-201ENST00000459540 60 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.72□□□□□ -1.97
NUP88Q99567 SNORA40.15-201ENST00000516884 107 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 Y_RNA.713-201ENST00000517013 96 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 Y_RNA.720-201ENST00000517166 92 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
NUP88Q99567 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
NUP88Q99567 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.72□□□□□ -1.97
NUP88Q99567 AC007336.1-201ENST00000576365 3828 ntBASIC2.72□□□□□ -1.97
NUP88Q99567 MIR21-201ENST00000362134 72 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 Y_RNA.458-201ENST00000384240 102 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 Y_RNA.459-201ENST00000384251 102 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 SNORD14D-201ENST00000384390 87 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 RNA5SP425-201ENST00000410336 112 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 RNA5SP475-201ENST00000410568 110 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 RNU6-57P-201ENST00000411348 103 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 MTND2P23-201ENST00000422990 651 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 RPS15AP28-201ENST00000435088 386 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 RPEP5-201ENST00000441137 268 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 AC131281.1-201ENST00000522984 164 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.71□□□□□ -1.98
NUP88Q99567 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.71□□□□□ -1.98
NUP88Q99567 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.71□□□□□ -1.98
NUP88Q99567 AC067747.1-201ENST00000608026 250 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 AL137847.3-201ENST00000611521 109 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.71□□□□□ -1.98
NUP88Q99567 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
NUP88Q99567 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
NUP88Q99567 Y_RNA.145-201ENST00000363527 102 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 Y_RNA.210-201ENST00000364161 110 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 MIR548B-201ENST00000385247 97 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 AL079342.1-201ENST00000401460 267 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 MIR1262-201ENST00000408276 93 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 RNA5SP270-201ENST00000411361 118 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 RAB28P5-201ENST00000427490 651 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 AC018634.1-201ENST00000437554 401 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 AL139109.1-201ENST00000455491 297 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 AC067942.3-201ENST00000512025 362 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 RNU6-948P-201ENST00000516374 107 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 AC233702.2-202ENST00000562547 291 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.7□□□□□ -1.98
NUP88Q99567 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
NUP88Q99567 ZNF271P-202ENST00000465539 1970 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 Y_RNA.99-201ENST00000363138 105 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 RNU6-961P-201ENST00000363893 105 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 SNORA63C-201ENST00000364578 129 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 Y_RNA.332-201ENST00000365271 113 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 RNU1-51P-201ENST00000365345 176 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 RNU6-1264P-201ENST00000383891 107 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 SNORA67.2-201ENST00000384300 149 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
NUP88Q99567 MRPL35P1-201ENST00000404272 572 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.69□□□□□ -1.98
NUP88Q99567 RNA5SP402-201ENST00000517148 110 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.69□□□□□ -1.98
NUP88Q99567 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.69□□□□□ -1.98
NUP88Q99567 MIR5194-201ENST00000582634 120 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 AC005176.2-201ENST00000596933 147 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 AL109918.3-201ENST00000603072 338 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 AL355297.3-201ENST00000604082 446 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 SNORD14A-201ENST00000606526 91 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 PART1_1.1-201ENST00000611761 217 ntBASIC2.69□□□□□ -1.98
NUP88Q99567 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
NUP88Q99567 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
NUP88Q99567 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 Y_RNA.143-201ENST00000363520 106 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 RNU6-975P-201ENST00000384296 105 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 RNU6-738P-201ENST00000384531 106 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 RNU6-160P-201ENST00000384591 107 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 ELOCP21-201ENST00000412558 336 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.68□□□□□ -1.98
NUP88Q99567 TOMM22P2-201ENST00000430735 237 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.68□□□□□ -1.98
NUP88Q99567 AC010531.2-201ENST00000465012 153 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 MRPS35P2-201ENST00000508242 191 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 RNU6-1045P-201ENST00000516321 107 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 RAC1P9-201ENST00000604990 392 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 snoZ196.1-201ENST00000625269 89 ntBASIC2.68□□□□□ -1.98
NUP88Q99567 MIR3674-201ENST00000636576 68 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms