Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 AC092794.2-201ENST00000620933 563 ntBASIC1.33□□□□□ -2.2
SCN2AQ99250 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SCN2AQ99250 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.32□□□□□ -2.2
SCN2AQ99250 MIR549A-201ENST00000385268 96 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
SCN2AQ99250 AL356432.1-201ENST00000405809 419 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 MIR1285-1-201ENST00000408593 84 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AL158823.1-201ENST00000418441 478 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 MTND1P4-201ENST00000435196 415 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.32□□□□□ -2.2
SCN2AQ99250 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.32□□□□□ -2.2
SCN2AQ99250 AC105029.1-201ENST00000520250 669 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.32□□□□□ -2.2
SCN2AQ99250 DEFB131C-201ENST00000528817 165 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 MIR4790-201ENST00000577799 79 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC022432.1-201ENST00000595739 310 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC080078.3-201ENST00000605407 463 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 snoZ196.1-201ENST00000625269 89 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 RNU6-727P-201ENST00000363592 107 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 Y_RNA.179-201ENST00000363844 90 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 RNU6-95P-201ENST00000384697 107 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 MIR625-201ENST00000385047 85 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
SCN2AQ99250 RNA5SP494-201ENST00000410653 129 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC245517.4-201ENST00000448601 281 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC074290.1-201ENST00000448883 135 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 COX6CP14-201ENST00000469580 174 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 MTND4P17-201ENST00000470444 350 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC023790.1-201ENST00000482174 347 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC011406.1-201ENST00000512440 370 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC090617.3-201ENST00000573670 475 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC005034.5-201ENST00000604219 466 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 MIR6515-201ENST00000619843 57 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 AC068205.3-201ENST00000636385 468 ntBASIC1.32□□□□□ -2.2
SCN2AQ99250 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.32□□□□□ -2.2
SCN2AQ99250 Y_RNA.99-201ENST00000363138 105 ntBASIC1.31□□□□□ -2.2
SCN2AQ99250 SNORA67.2-201ENST00000384300 149 ntBASIC1.31□□□□□ -2.2
SCN2AQ99250 AC107399.1-201ENST00000451226 265 ntBASIC1.31□□□□□ -2.2
SCN2AQ99250 Y_RNA.635-201ENST00000459041 101 ntBASIC1.31□□□□□ -2.2
SCN2AQ99250 HMGB3P17-201ENST00000504195 649 ntBASIC1.31□□□□□ -2.2
SCN2AQ99250 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.31□□□□□ -2.2
SCN2AQ99250 RN7SKP49-201ENST00000516675 260 ntBASIC1.31□□□□□ -2.2
SCN2AQ99250 MIR2355-201ENST00000517199 87 ntBASIC1.31□□□□□ -2.2
SCN2AQ99250 APOOP3-201ENST00000536787 586 ntBASIC1.31□□□□□ -2.2
SCN2AQ99250 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.31□□□□□ -2.2
SCN2AQ99250 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
SCN2AQ99250 RNU6-99P-201ENST00000364721 107 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RNU6-1026P-201ENST00000384465 108 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RN7SKP51-201ENST00000410781 304 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.3□□□□□ -2.2
SCN2AQ99250 AL353997.1-201ENST00000432936 108 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.3□□□□□ -2.2
SCN2AQ99250 AC098614.3-201ENST00000438957 440 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RNU1-131P-201ENST00000458943 161 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 Y_RNA.653-201ENST00000459091 95 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RNU7-14P-201ENST00000459331 62 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AC087477.1-201ENST00000465747 340 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 ATP5EP1-201ENST00000510257 156 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AC046134.1-201ENST00000514454 666 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RNU7-193P-201ENST00000516723 65 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RNU1-92P-201ENST00000517017 135 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AC034114.1-201ENST00000520293 285 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.3□□□□□ -2.2
SCN2AQ99250 AC010900.2-201ENST00000604508 210 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AL590240.4-201ENST00000616908 390 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RMST_2.1-201ENST00000617263 136 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
SCN2AQ99250 MTND5P10-201ENST00000603719 1809 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RNU6-595P-201ENST00000363944 107 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 MIR300-201ENST00000401138 83 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 MIR934-201ENST00000401241 83 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RNU6-1050P-201ENST00000410388 107 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AC138393.2-201ENST00000414742 246 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AC096920.1-201ENST00000423991 241 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SCN2AQ99250 MTND4P18-201ENST00000447010 465 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 MTND5P20-201ENST00000448677 143 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RPS29P23-201ENST00000458635 123 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 HMGN1P7-201ENST00000491722 313 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 RNU7-175P-201ENST00000515915 61 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 SNORA31.17-201ENST00000516953 127 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 MIR4273-201ENST00000582824 84 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 AC005786.1-201ENST00000588553 154 ntBASIC1.3□□□□□ -2.2
SCN2AQ99250 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SCN2AQ99250 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.29□□□□□ -2.2
SCN2AQ99250 MIR153-2-201ENST00000385225 87 ntBASIC1.29□□□□□ -2.2
SCN2AQ99250 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN2AQ99250 MTCO3P8-201ENST00000453691 755 ntBASIC1.29□□□□□ -2.2
SCN2AQ99250 RPS29P29-201ENST00000456396 171 ntBASIC1.29□□□□□ -2.2
SCN2AQ99250 PRDX4P1-201ENST00000507189 574 ntBASIC1.29□□□□□ -2.2
SCN2AQ99250 RNU6-277P-201ENST00000516272 106 ntBASIC1.29□□□□□ -2.2
SCN2AQ99250 RNU6-307P-201ENST00000516743 106 ntBASIC1.29□□□□□ -2.2
SCN2AQ99250 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.29□□□□□ -2.2
SCN2AQ99250 RNY1P16-201ENST00000363063 111 ntBASIC1.28□□□□□ -2.2
SCN2AQ99250 RNU6-743P-201ENST00000364151 106 ntBASIC1.28□□□□□ -2.2
SCN2AQ99250 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.28□□□□□ -2.2
SCN2AQ99250 RNU6-968P-201ENST00000384076 107 ntBASIC1.28□□□□□ -2.2
SCN2AQ99250 SNORA69.1-201ENST00000390904 137 ntBASIC1.28□□□□□ -2.2
SCN2AQ99250 RNU6-1093P-201ENST00000391194 107 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms