Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
USP39Q53GS9 RNU5F-3P-201ENST00000363767 117 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 RNU6-151P-201ENST00000364158 107 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 RNU6-1280P-201ENST00000365211 107 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 RNU6-793P-201ENST00000384233 104 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 SNORD20-201ENST00000384550 80 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.03□□□□□ -1.92
USP39Q53GS9 HMGN2P10-201ENST00000448085 265 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.03□□□□□ -1.92
USP39Q53GS9 U8.19-201ENST00000459095 133 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.03□□□□□ -1.92
USP39Q53GS9 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.03□□□□□ -1.92
USP39Q53GS9 RAC1P5-201ENST00000512182 576 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 SNORA31.21-201ENST00000517180 77 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 AC090897.2-201ENST00000581715 130 ntBASIC3.03□□□□□ -1.92
USP39Q53GS9 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.03□□□□□ -1.92
USP39Q53GS9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.03□□□□□ -1.92
USP39Q53GS9 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
USP39Q53GS9 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.03□□□□□ -1.92
USP39Q53GS9 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
USP39Q53GS9 AC093831.2-201ENST00000624393 3427 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
USP39Q53GS9 RNU6-454P-201ENST00000364292 107 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 Y_RNA.261-201ENST00000364631 102 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 RNA5SP205-201ENST00000364653 136 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 RNU6-275P-201ENST00000364910 107 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 Y_RNA.329-201ENST00000365209 107 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 Y_RNA.357-201ENST00000365487 109 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 RNU6-245P-201ENST00000384020 107 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 RNU6-763P-201ENST00000390865 106 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 RNU6-381P-201ENST00000391259 108 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 AC096649.2-201ENST00000416186 393 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.02□□□□□ -1.93
USP39Q53GS9 AC019205.3-201ENST00000424573 156 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.02□□□□□ -1.93
USP39Q53GS9 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.02□□□□□ -1.93
USP39Q53GS9 AL135790.2-201ENST00000437701 267 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 AC090525.1-201ENST00000479116 478 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.02□□□□□ -1.93
USP39Q53GS9 RNU6-436P-201ENST00000516171 114 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 RNU2-12P-201ENST00000517216 168 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.02□□□□□ -1.93
USP39Q53GS9 MIR4319-201ENST00000577285 85 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 AC090616.3-201ENST00000582184 217 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 MIR4435-1-201ENST00000582552 80 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.02□□□□□ -1.93
USP39Q53GS9 AC110079.1-202ENST00000635213 138 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 MIR3674-201ENST00000636576 68 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 AL355596.1-201ENST00000565399 3996 ntBASIC3.02□□□□□ -1.93
USP39Q53GS9 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.02□□□□□ -1.93
USP39Q53GS9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
USP39Q53GS9 RNU6-801P-201ENST00000364087 105 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 RNU6-270P-201ENST00000364131 105 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 Y_RNA.218-201ENST00000364218 104 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 RNU6-215P-201ENST00000365169 102 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 SNORD21-201ENST00000383953 95 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 RNU6-1310P-201ENST00000384153 107 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 SNORA40.19-201ENST00000390846 128 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 RNU6-239P-201ENST00000390990 99 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 RNA5SP390-201ENST00000410191 113 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.01□□□□□ -1.93
USP39Q53GS9 BPY2DP-201ENST00000422208 265 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 UQCRHP3-201ENST00000451503 251 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.01□□□□□ -1.93
USP39Q53GS9 RN7SL75P-201ENST00000461926 281 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.01□□□□□ -1.93
USP39Q53GS9 DEFB131C-201ENST00000528817 165 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 AC021739.1-201ENST00000559631 174 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.01□□□□□ -1.93
USP39Q53GS9 MIR3684-201ENST00000579779 74 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.01□□□□□ -1.93
USP39Q53GS9 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
USP39Q53GS9 AC010332.2-201ENST00000613083 1904 ntBASIC3.01□□□□□ -1.93
USP39Q53GS9 RNU6-727P-201ENST00000363592 107 ntBASIC3□□□□□ -1.93
USP39Q53GS9 RNU6-487P-201ENST00000365430 104 ntBASIC3□□□□□ -1.93
USP39Q53GS9 RNU6-198P-201ENST00000384258 104 ntBASIC3□□□□□ -1.93
USP39Q53GS9 RNU6-1248P-201ENST00000391096 64 ntBASIC3□□□□□ -1.93
USP39Q53GS9 RNA5SP492-201ENST00000411330 114 ntBASIC3□□□□□ -1.93
USP39Q53GS9 CR769767.1-201ENST00000436337 346 ntBASIC3□□□□□ -1.93
USP39Q53GS9 AC008267.6-201ENST00000441664 139 ntBASIC3□□□□□ -1.93
USP39Q53GS9 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3□□□□□ -1.93
USP39Q53GS9 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3□□□□□ -1.93
USP39Q53GS9 RPL26P9-201ENST00000457466 433 ntBASIC3□□□□□ -1.93
USP39Q53GS9 MIR548X2-201ENST00000579776 100 ntBASIC3□□□□□ -1.93
USP39Q53GS9 AL356575.1-201ENST00000603008 283 ntBASIC3□□□□□ -1.93
USP39Q53GS9 AC005520.5-201ENST00000613926 164 ntBASIC3□□□□□ -1.93
USP39Q53GS9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP39Q53GS9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
USP39Q53GS9 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
USP39Q53GS9 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
USP39Q53GS9 RNU1-62P-201ENST00000362599 164 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 snoU2_19.4-201ENST00000364329 80 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 Y_RNA.353-201ENST00000365440 108 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 U3.40-201ENST00000408706 208 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 AC063976.3-201ENST00000426849 329 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 AC114982.1-201ENST00000469402 321 ntBASIC2.99□□□□□ -1.93
USP39Q53GS9 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.99□□□□□ -1.93
USP39Q53GS9 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
USP39Q53GS9 RNA5SP385-201ENST00000515947 110 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 146.5 ms