Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
USP41Q3LFD5 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
USP41Q3LFD5 MTND4P1-201ENST00000457501 1466 ntBASIC2.15□□□□□ -2.06
USP41Q3LFD5 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.15□□□□□ -2.06
USP41Q3LFD5 RNA5SP361-201ENST00000362686 118 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 Y_RNA.132-201ENST00000363421 102 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 RNA5SP99-201ENST00000364020 114 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 Y_RNA.252-201ENST00000364556 101 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 RNA5SP138-201ENST00000365098 114 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 SNORD42.2-201ENST00000365570 69 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 RNU4-52P-201ENST00000384209 138 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 MIR628-201ENST00000385229 95 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 RNA5SP213-201ENST00000391031 106 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 MIR1283-1-201ENST00000408494 87 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 AC123900.1-201ENST00000420390 96 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 AC245102.2-201ENST00000448956 180 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 AC091144.1-201ENST00000519573 138 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 MIR5002-201ENST00000584713 97 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 MZT1P2-201ENST00000604387 248 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 AC012640.5-201ENST00000623897 319 ntBASIC2.15□□□□□ -2.07
USP41Q3LFD5 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
USP41Q3LFD5 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
USP41Q3LFD5 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
USP41Q3LFD5 MTND5P35-201ENST00000557537 1720 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 AC245060.5-201ENST00000610778 3293 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
USP41Q3LFD5 Y_RNA.138-201ENST00000363462 102 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 SNORD87-201ENST00000364849 89 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 Y_RNA.332-201ENST00000365271 113 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 Y_RNA.415-201ENST00000384012 112 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 AL355497.1-201ENST00000406262 551 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 SNORD23.1-201ENST00000408212 104 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 IPO7P1-201ENST00000442031 636 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.14□□□□□ -2.07
USP41Q3LFD5 CHEK2P4-201ENST00000450340 246 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 AC016925.1-201ENST00000458303 298 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 Y_RNA.639-201ENST00000458981 102 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 Y_RNA.683-201ENST00000516508 93 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 AC002984.1-201ENST00000591692 448 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 AC006157.1-201ENST00000611750 366 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 U2.1-201ENST00000618978 145 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 AC091925.1-201ENST00000623204 462 ntBASIC2.14□□□□□ -2.07
USP41Q3LFD5 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.14□□□□□ -2.07
USP41Q3LFD5 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
USP41Q3LFD5 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
USP41Q3LFD5 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
USP41Q3LFD5 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
USP41Q3LFD5 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.13□□□□□ -2.07
USP41Q3LFD5 Y_RNA.31-201ENST00000362574 102 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 Y_RNA.39-201ENST00000362620 98 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 Y_RNA.99-201ENST00000363138 105 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 Y_RNA.395-201ENST00000383945 109 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 RNU6-418P-201ENST00000384035 107 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 RNU6-474P-201ENST00000384243 107 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 MIR329-1-201ENST00000385028 80 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
USP41Q3LFD5 AC018865.2-201ENST00000423631 129 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 AC139712.2-201ENST00000424302 339 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.13□□□□□ -2.07
USP41Q3LFD5 AL137792.2-201ENST00000443484 235 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.13□□□□□ -2.07
USP41Q3LFD5 AC006600.1-201ENST00000572529 153 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 MIR6845-201ENST00000613182 61 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.13□□□□□ -2.07
USP41Q3LFD5 AC130454.1-201ENST00000622948 401 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.13□□□□□ -2.07
USP41Q3LFD5 AL078596.1-201ENST00000624856 447 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 AC068205.3-201ENST00000636385 468 ntBASIC2.13□□□□□ -2.07
USP41Q3LFD5 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
USP41Q3LFD5 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.12□□□□□ -2.07
USP41Q3LFD5 Y_RNA.112-201ENST00000363250 102 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 RNY1P14-201ENST00000384426 108 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 U3.40-201ENST00000408706 208 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 Y_RNA.595-201ENST00000410403 105 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 RNA5SP504-201ENST00000410676 117 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 RPL23AP7-203ENST00000449021 469 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 AC007395.1-201ENST00000451333 677 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 AC114982.1-201ENST00000469402 321 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 HMGN2P9-201ENST00000476875 229 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 Y_RNA.701-201ENST00000516812 110 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 MIR2355-201ENST00000517199 87 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 SNORA31.25-201ENST00000517242 134 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.12□□□□□ -2.07
USP41Q3LFD5 AC007485.1-201ENST00000616755 206 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 AC138305.3-201ENST00000624988 240 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 MIR4272-201ENST00000635924 64 ntBASIC2.12□□□□□ -2.07
USP41Q3LFD5 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.11□□□□□ -2.07
USP41Q3LFD5 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
USP41Q3LFD5 RNU6-1301P-201ENST00000362724 104 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 RNU6-1164P-201ENST00000364428 107 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 RNU1-115P-201ENST00000365329 160 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 RNU6-318P-201ENST00000384283 103 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 SNORA67.2-201ENST00000384300 149 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 RNU6-160P-201ENST00000384591 107 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 MIR586-201ENST00000385035 97 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.11□□□□□ -2.07
USP41Q3LFD5 UQCRBP2-201ENST00000447827 297 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 AC074290.1-201ENST00000448883 135 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 AC016717.1-201ENST00000448918 286 ntBASIC2.11□□□□□ -2.07
USP41Q3LFD5 Y_RNA.631-201ENST00000459607 101 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms