Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
PKNOX1P55347 Y_RNA.9-201ENST00000362354 101 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 Y_RNA.89-201ENST00000363031 102 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 RNU6-457P-201ENST00000363999 107 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 Y_RNA.318-201ENST00000365131 97 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 Y_RNA.415-201ENST00000384012 112 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 Y_RNA.450-201ENST00000384198 113 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 RNU6-17P-201ENST00000384245 107 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 RNU6-18P-201ENST00000384527 107 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 RNU6-939P-201ENST00000384634 107 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
PKNOX1P55347 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
PKNOX1P55347 MRPL35P1-201ENST00000404272 572 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 MIR1253-201ENST00000408273 105 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 RNU6-373P-201ENST00000411247 98 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.19□□□□□ -2.22
PKNOX1P55347 MTATP6P13-201ENST00000438531 667 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.19□□□□□ -2.22
PKNOX1P55347 RNU6-1088P-201ENST00000516850 104 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 AC024995.1-201ENST00000523014 93 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 RAB11AP2-201ENST00000545905 639 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.19□□□□□ -2.22
PKNOX1P55347 MIR4709-201ENST00000577272 72 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.19□□□□□ -2.22
PKNOX1P55347 AL512598.1-201ENST00000610158 273 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.19□□□□□ -2.22
PKNOX1P55347 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
PKNOX1P55347 Y_RNA.3-201ENST00000362331 103 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RNU6-727P-201ENST00000363592 107 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RNU6-1240P-201ENST00000365155 104 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RNU6-831P-201ENST00000384548 107 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RNU6-159P-201ENST00000391080 106 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RPL21P1-201ENST00000399532 476 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 MIR1185-2-201ENST00000408687 86 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 AC004965.1-201ENST00000413033 213 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 COX6CP10-201ENST00000416832 224 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RPL30P16-201ENST00000419341 429 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 AC008134.1-201ENST00000420943 193 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 AL135790.2-201ENST00000437701 267 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 AC091179.3-201ENST00000474761 144 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RPL30P7-201ENST00000479312 323 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RPS29P25-201ENST00000481709 171 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 HMGN1P12-201ENST00000499125 195 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RNU6-273P-201ENST00000516937 96 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 AL442163.3-201ENST00000554110 156 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 MIR4421-201ENST00000578133 69 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 AL078604.3-201ENST00000615580 211 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 MTND5P35-201ENST00000557537 1720 ntBASIC1.18□□□□□ -2.22
PKNOX1P55347 RNU6-623P-201ENST00000363143 105 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 RNU6-137P-201ENST00000363680 108 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 Y_RNA.516-201ENST00000384541 124 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 Y_RNA.533-201ENST00000384596 114 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 MIR1285-1-201ENST00000408593 84 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.17□□□□□ -2.22
PKNOX1P55347 AC005002.2-201ENST00000438228 269 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 RNU7-34P-201ENST00000459394 64 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 RPS26P45-201ENST00000471748 340 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.17□□□□□ -2.22
PKNOX1P55347 SNORA31.10-201ENST00000516482 106 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 RNU6-1198P-201ENST00000516904 67 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 RNU7-128P-201ENST00000517247 62 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 FRG2DP-202ENST00000566967 323 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 AL929325.1-201ENST00000603096 117 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 AC073413.2-201ENST00000604332 360 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 AC022217.4-201ENST00000604389 163 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 AC012557.2-201ENST00000605919 418 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 AC093783.1-201ENST00000612976 329 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 AC100810.6-201ENST00000638068 285 ntBASIC1.17□□□□□ -2.22
PKNOX1P55347 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.17□□□□□ -2.22
PKNOX1P55347 U3.8-201ENST00000363675 217 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 RNU6-1059P-201ENST00000363752 98 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 RNA5SP323-201ENST00000391094 133 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.16□□□□□ -2.22
PKNOX1P55347 EIF1P1-201ENST00000421436 341 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 AL591806.2-201ENST00000433122 173 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 NDUFB4P10-201ENST00000452541 359 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 RN7SKP210-201ENST00000459176 261 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.16□□□□□ -2.22
PKNOX1P55347 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.16□□□□□ -2.22
PKNOX1P55347 MIR3937-201ENST00000580135 106 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 AL365434.2-201ENST00000607979 234 ntBASIC1.16□□□□□ -2.22
PKNOX1P55347 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.16□□□□□ -2.22
PKNOX1P55347 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.23
PKNOX1P55347 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
PKNOX1P55347 RNU4-12P-201ENST00000365233 139 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 RNU6-596P-201ENST00000365395 98 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 RNU6-1065P-201ENST00000384513 106 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 MIR10B-201ENST00000385011 110 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 MIR513A1-201ENST00000385138 129 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 AL591704.2-201ENST00000421658 181 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 AC010154.1-201ENST00000425857 269 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 MTND1P17-201ENST00000448961 204 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.15□□□□□ -2.23
PKNOX1P55347 AP000870.1-201ENST00000472927 406 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.15□□□□□ -2.23
PKNOX1P55347 AC103851.1-201ENST00000506833 274 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 DNAJC19P9-201ENST00000555084 351 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 AC021506.2-201ENST00000612354 169 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 AL359075.3-201ENST00000613288 217 ntBASIC1.15□□□□□ -2.23
PKNOX1P55347 Y_RNA.157-201ENST00000363638 102 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms