Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 Y_RNA.331-201ENST00000365267 102 ntBASIC3.18□□□□□ -1.9
MRE11P49959 RNY4P28-201ENST00000365281 93 ntBASIC3.18□□□□□ -1.9
MRE11P49959 Y_RNA.418-201ENST00000384029 102 ntBASIC3.18□□□□□ -1.9
MRE11P49959 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
MRE11P49959 Y_RNA.626-201ENST00000411288 95 ntBASIC3.18□□□□□ -1.9
MRE11P49959 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.18□□□□□ -1.9
MRE11P49959 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.18□□□□□ -1.9
MRE11P49959 RPS29P21-201ENST00000496272 170 ntBASIC3.18□□□□□ -1.9
MRE11P49959 SEM1P1-201ENST00000506694 209 ntBASIC3.18□□□□□ -1.9
MRE11P49959 RNU5F-2P-201ENST00000516066 82 ntBASIC3.18□□□□□ -1.9
MRE11P49959 SNORD116-28-201ENST00000516123 91 ntBASIC3.18□□□□□ -1.9
MRE11P49959 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.18□□□□□ -1.9
MRE11P49959 AC024405.2-202ENST00000532731 184 ntBASIC3.18□□□□□ -1.9
MRE11P49959 AL137100.2-201ENST00000555786 315 ntBASIC3.18□□□□□ -1.9
MRE11P49959 AC105137.2-201ENST00000569073 466 ntBASIC3.18□□□□□ -1.9
MRE11P49959 AC055872.1-201ENST00000570978 278 ntBASIC3.18□□□□□ -1.9
MRE11P49959 RPS15AP11-201ENST00000594193 385 ntBASIC3.18□□□□□ -1.9
MRE11P49959 AC008739.2-201ENST00000597006 317 ntBASIC3.18□□□□□ -1.9
MRE11P49959 RNU6-91P-201ENST00000607774 107 ntBASIC3.18□□□□□ -1.9
MRE11P49959 AC005520.5-201ENST00000613926 164 ntBASIC3.18□□□□□ -1.9
MRE11P49959 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.18□□□□□ -1.9
MRE11P49959 AC006001.4-201ENST00000622243 395 ntBASIC3.18□□□□□ -1.9
MRE11P49959 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
MRE11P49959 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
MRE11P49959 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
MRE11P49959 Y_RNA.136-201ENST00000363444 102 ntBASIC3.17□□□□□ -1.9
MRE11P49959 Y_RNA.179-201ENST00000363844 90 ntBASIC3.17□□□□□ -1.9
MRE11P49959 SNORA9.2-201ENST00000365361 133 ntBASIC3.17□□□□□ -1.9
MRE11P49959 RNU6-514P-201ENST00000384208 107 ntBASIC3.17□□□□□ -1.9
MRE11P49959 MIR767-201ENST00000390228 109 ntBASIC3.17□□□□□ -1.9
MRE11P49959 MIR208B-201ENST00000401172 77 ntBASIC3.17□□□□□ -1.9
MRE11P49959 MIR1289-2-201ENST00000408360 111 ntBASIC3.17□□□□□ -1.9
MRE11P49959 RNU6-651P-201ENST00000411040 105 ntBASIC3.17□□□□□ -1.9
MRE11P49959 RPL23AP36-201ENST00000413895 458 ntBASIC3.17□□□□□ -1.9
MRE11P49959 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.17□□□□□ -1.9
MRE11P49959 AL365496.1-201ENST00000426885 215 ntBASIC3.17□□□□□ -1.9
MRE11P49959 MTCO1P5-201ENST00000433573 344 ntBASIC3.17□□□□□ -1.9
MRE11P49959 MRPS10P1-201ENST00000448483 130 ntBASIC3.17□□□□□ -1.9
MRE11P49959 RNU7-120P-201ENST00000459334 63 ntBASIC3.17□□□□□ -1.9
MRE11P49959 COX6CP14-201ENST00000469580 174 ntBASIC3.17□□□□□ -1.9
MRE11P49959 AC091959.1-201ENST00000495857 238 ntBASIC3.17□□□□□ -1.9
MRE11P49959 AC074133.1-201ENST00000515696 183 ntBASIC3.17□□□□□ -1.9
MRE11P49959 RNA5SP402-201ENST00000517148 110 ntBASIC3.17□□□□□ -1.9
MRE11P49959 CYCSP23-201ENST00000519781 313 ntBASIC3.17□□□□□ -1.9
MRE11P49959 IGKV3-31-201ENST00000523109 329 ntBASIC3.17□□□□□ -1.9
MRE11P49959 AC079600.2-201ENST00000550076 130 ntBASIC3.17□□□□□ -1.9
MRE11P49959 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.17□□□□□ -1.9
MRE11P49959 AL512605.2-201ENST00000592972 256 ntBASIC3.17□□□□□ -1.9
MRE11P49959 AC022441.3-201ENST00000605737 136 ntBASIC3.17□□□□□ -1.9
MRE11P49959 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.17□□□□□ -1.9
MRE11P49959 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.17□□□□□ -1.9
MRE11P49959 AL590240.4-201ENST00000616908 390 ntBASIC3.17□□□□□ -1.9
MRE11P49959 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
MRE11P49959 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
MRE11P49959 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.16□□□□□ -1.9
MRE11P49959 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
MRE11P49959 AC010889.1-201ENST00000566193 2666 ntBASIC3.16□□□□□ -1.9
MRE11P49959 UBE2WP1-201ENST00000362030 340 ntBASIC3.16□□□□□ -1.9
MRE11P49959 RNU6-529P-201ENST00000363383 104 ntBASIC3.16□□□□□ -1.9
MRE11P49959 Y_RNA.292-201ENST00000364904 97 ntBASIC3.16□□□□□ -1.9
MRE11P49959 Y_RNA.383-201ENST00000383855 97 ntBASIC3.16□□□□□ -1.9
MRE11P49959 RNU6-245P-201ENST00000384020 107 ntBASIC3.16□□□□□ -1.9
MRE11P49959 RNU6-793P-201ENST00000384233 104 ntBASIC3.16□□□□□ -1.9
MRE11P49959 RNA5SP492-201ENST00000411330 114 ntBASIC3.16□□□□□ -1.9
MRE11P49959 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.16□□□□□ -1.9
MRE11P49959 POLR2KP2-201ENST00000438155 177 ntBASIC3.16□□□□□ -1.9
MRE11P49959 UQCRBP2-201ENST00000447827 297 ntBASIC3.16□□□□□ -1.9
MRE11P49959 NDUFB4P10-201ENST00000452541 359 ntBASIC3.16□□□□□ -1.9
MRE11P49959 AC091179.3-201ENST00000474761 144 ntBASIC3.16□□□□□ -1.9
MRE11P49959 SRIP1-201ENST00000489235 288 ntBASIC3.16□□□□□ -1.9
MRE11P49959 CKS1BP2-201ENST00000497342 240 ntBASIC3.16□□□□□ -1.9
MRE11P49959 AC107393.1-201ENST00000512403 346 ntBASIC3.16□□□□□ -1.9
MRE11P49959 AP002392.1-201ENST00000537692 208 ntBASIC3.16□□□□□ -1.9
MRE11P49959 AC018448.1-201ENST00000552843 316 ntBASIC3.16□□□□□ -1.9
MRE11P49959 RPL21P9-201ENST00000556149 474 ntBASIC3.16□□□□□ -1.9
MRE11P49959 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.16□□□□□ -1.9
MRE11P49959 MIR4282-201ENST00000583613 67 ntBASIC3.16□□□□□ -1.9
MRE11P49959 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.16□□□□□ -1.9
MRE11P49959 AC011921.3-201ENST00000605540 361 ntBASIC3.16□□□□□ -1.9
MRE11P49959 AL353997.5-201ENST00000618886 171 ntBASIC3.16□□□□□ -1.9
MRE11P49959 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
MRE11P49959 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.16□□□□□ -1.9
MRE11P49959 ZNF658B-202ENST00000615961 3375 ntBASIC3.16□□□□□ -1.9
MRE11P49959 RNU6-1010P-201ENST00000362757 107 ntBASIC3.15□□□□□ -1.91
MRE11P49959 Y_RNA.82-201ENST00000363000 102 ntBASIC3.15□□□□□ -1.91
MRE11P49959 Y_RNA.92-201ENST00000363043 102 ntBASIC3.15□□□□□ -1.91
MRE11P49959 SNORD56.5-201ENST00000364281 72 ntBASIC3.15□□□□□ -1.91
MRE11P49959 Y_RNA.235-201ENST00000364412 102 ntBASIC3.15□□□□□ -1.91
MRE11P49959 RNU4-56P-201ENST00000364700 142 ntBASIC3.15□□□□□ -1.91
MRE11P49959 Y_RNA.306-201ENST00000365015 102 ntBASIC3.15□□□□□ -1.91
MRE11P49959 Y_RNA.312-201ENST00000365089 102 ntBASIC3.15□□□□□ -1.91
MRE11P49959 Y_RNA.322-201ENST00000365151 102 ntBASIC3.15□□□□□ -1.91
MRE11P49959 CBX3P9-201ENST00000402326 552 ntBASIC3.15□□□□□ -1.91
MRE11P49959 SNORA3.2-201ENST00000408221 125 ntBASIC3.15□□□□□ -1.91
MRE11P49959 Y_RNA.590-201ENST00000410140 107 ntBASIC3.15□□□□□ -1.91
MRE11P49959 RNU2-61P-201ENST00000411069 191 ntBASIC3.15□□□□□ -1.91
MRE11P49959 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.15□□□□□ -1.91
MRE11P49959 Y_RNA.650-201ENST00000459002 102 ntBASIC3.15□□□□□ -1.91
MRE11P49959 RNU6-625P-201ENST00000459412 107 ntBASIC3.15□□□□□ -1.91
MRE11P49959 RNU6-966P-201ENST00000516479 104 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms