Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-451P-201ENST00000362921 107 ntBASIC1.12□□□□□ -2.23
RFX3P48380 RNU5F-3P-201ENST00000363767 117 ntBASIC1.12□□□□□ -2.23
RFX3P48380 Y_RNA.372-201ENST00000365599 102 ntBASIC1.12□□□□□ -2.23
RFX3P48380 RNU6-780P-201ENST00000391030 104 ntBASIC1.12□□□□□ -2.23
RFX3P48380 MIR1253-201ENST00000408273 105 ntBASIC1.12□□□□□ -2.23
RFX3P48380 HMGN2P34-201ENST00000437647 269 ntBASIC1.12□□□□□ -2.23
RFX3P48380 NDUFB4P10-201ENST00000452541 359 ntBASIC1.12□□□□□ -2.23
RFX3P48380 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.12□□□□□ -2.23
RFX3P48380 AC093852.1-201ENST00000503587 266 ntBASIC1.12□□□□□ -2.23
RFX3P48380 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.12□□□□□ -2.23
RFX3P48380 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.12□□□□□ -2.23
RFX3P48380 ACA59.1-201ENST00000515966 143 ntBASIC1.12□□□□□ -2.23
RFX3P48380 RNU6-506P-201ENST00000516553 94 ntBASIC1.12□□□□□ -2.23
RFX3P48380 Y_RNA.704-201ENST00000516851 102 ntBASIC1.12□□□□□ -2.23
RFX3P48380 MIR4742-201ENST00000581069 85 ntBASIC1.12□□□□□ -2.23
RFX3P48380 AL138726.1-201ENST00000614873 333 ntBASIC1.12□□□□□ -2.23
RFX3P48380 Y_RNA.135-201ENST00000363439 95 ntBASIC1.11□□□□□ -2.23
RFX3P48380 Y_RNA.151-201ENST00000363566 112 ntBASIC1.11□□□□□ -2.23
RFX3P48380 SNORA25.8-201ENST00000364831 128 ntBASIC1.11□□□□□ -2.23
RFX3P48380 RNU6-950P-201ENST00000384651 107 ntBASIC1.11□□□□□ -2.23
RFX3P48380 RNU6-95P-201ENST00000384697 107 ntBASIC1.11□□□□□ -2.23
RFX3P48380 MIR181A1-201ENST00000385026 110 ntBASIC1.11□□□□□ -2.23
RFX3P48380 MIR153-2-201ENST00000385225 87 ntBASIC1.11□□□□□ -2.23
RFX3P48380 AL590002.1-201ENST00000406554 418 ntBASIC1.11□□□□□ -2.23
RFX3P48380 Y_RNA.615-201ENST00000410769 117 ntBASIC1.11□□□□□ -2.23
RFX3P48380 RNU6-373P-201ENST00000411247 98 ntBASIC1.11□□□□□ -2.23
RFX3P48380 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.11□□□□□ -2.23
RFX3P48380 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.11□□□□□ -2.23
RFX3P48380 RPS29P29-201ENST00000456396 171 ntBASIC1.11□□□□□ -2.23
RFX3P48380 MTND1P11-201ENST00000456661 876 ntBASIC1.11□□□□□ -2.23
RFX3P48380 RNU6-221P-201ENST00000459541 99 ntBASIC1.11□□□□□ -2.23
RFX3P48380 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.11□□□□□ -2.23
RFX3P48380 MTND1P5-201ENST00000517906 940 ntBASIC1.11□□□□□ -2.23
RFX3P48380 RAB11AP2-201ENST00000545905 639 ntBASIC1.11□□□□□ -2.23
RFX3P48380 AL442163.3-201ENST00000554110 156 ntBASIC1.11□□□□□ -2.23
RFX3P48380 MIR4709-201ENST00000577272 72 ntBASIC1.11□□□□□ -2.23
RFX3P48380 MIR3660-201ENST00000584845 100 ntBASIC1.11□□□□□ -2.23
RFX3P48380 AC073413.2-201ENST00000604332 360 ntBASIC1.11□□□□□ -2.23
RFX3P48380 AL365434.2-201ENST00000607979 234 ntBASIC1.11□□□□□ -2.23
RFX3P48380 AC006504.8-201ENST00000621046 635 ntBASIC1.11□□□□□ -2.23
RFX3P48380 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.11□□□□□ -2.23
RFX3P48380 AC099654.12-201ENST00000639868 649 ntBASIC1.11□□□□□ -2.23
RFX3P48380 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
RFX3P48380 RNU4-24P-201ENST00000364565 139 ntBASIC1.1□□□□□ -2.23
RFX3P48380 MIR618-201ENST00000385287 98 ntBASIC1.1□□□□□ -2.23
RFX3P48380 RNU6-57P-201ENST00000411348 103 ntBASIC1.1□□□□□ -2.23
RFX3P48380 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.1□□□□□ -2.23
RFX3P48380 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.1□□□□□ -2.23
RFX3P48380 MTCO3P18-201ENST00000440206 761 ntBASIC1.1□□□□□ -2.23
RFX3P48380 MTND2P22-201ENST00000444325 1033 ntBASIC1.1□□□□□ -2.23
RFX3P48380 RNU7-66P-201ENST00000459469 62 ntBASIC1.1□□□□□ -2.23
RFX3P48380 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.1□□□□□ -2.23
RFX3P48380 RNU6-256P-201ENST00000516747 97 ntBASIC1.1□□□□□ -2.23
RFX3P48380 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.1□□□□□ -2.23
RFX3P48380 AL512310.8-201ENST00000550183 120 ntBASIC1.1□□□□□ -2.23
RFX3P48380 AC245505.1-201ENST00000556398 224 ntBASIC1.1□□□□□ -2.23
RFX3P48380 7SK.7-201ENST00000603504 247 ntBASIC1.1□□□□□ -2.23
RFX3P48380 AL050343.2-201ENST00000607338 280 ntBASIC1.1□□□□□ -2.23
RFX3P48380 AL355802.3-201ENST00000607571 545 ntBASIC1.1□□□□□ -2.23
RFX3P48380 AC006001.4-201ENST00000622243 395 ntBASIC1.1□□□□□ -2.23
RFX3P48380 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.1□□□□□ -2.23
RFX3P48380 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.1□□□□□ -2.23
RFX3P48380 Y_RNA.287-201ENST00000364853 94 ntBASIC1.09□□□□□ -2.23
RFX3P48380 RNU6-1240P-201ENST00000365155 104 ntBASIC1.09□□□□□ -2.23
RFX3P48380 Y_RNA.414-201ENST00000384011 101 ntBASIC1.09□□□□□ -2.23
RFX3P48380 RNU6-1065P-201ENST00000384513 106 ntBASIC1.09□□□□□ -2.23
RFX3P48380 RNU6-417P-201ENST00000384712 107 ntBASIC1.09□□□□□ -2.23
RFX3P48380 MIR32-201ENST00000384965 70 ntBASIC1.09□□□□□ -2.23
RFX3P48380 MIR517A-201ENST00000385001 87 ntBASIC1.09□□□□□ -2.23
RFX3P48380 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.09□□□□□ -2.23
RFX3P48380 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.09□□□□□ -2.23
RFX3P48380 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.09□□□□□ -2.23
RFX3P48380 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.09□□□□□ -2.23
RFX3P48380 RNU6-314P-201ENST00000516574 104 ntBASIC1.09□□□□□ -2.23
RFX3P48380 RNU6-58P-201ENST00000517143 103 ntBASIC1.09□□□□□ -2.23
RFX3P48380 AC025647.1-201ENST00000517879 253 ntBASIC1.09□□□□□ -2.23
RFX3P48380 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.09□□□□□ -2.23
RFX3P48380 AC109635.3-201ENST00000529536 185 ntBASIC1.09□□□□□ -2.23
RFX3P48380 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.09□□□□□ -2.23
RFX3P48380 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.09□□□□□ -2.23
RFX3P48380 MZT1P2-201ENST00000604387 248 ntBASIC1.09□□□□□ -2.23
RFX3P48380 AC124303.1-201ENST00000605703 360 ntBASIC1.09□□□□□ -2.23
RFX3P48380 AC103591.3-201ENST00000608684 209 ntBASIC1.09□□□□□ -2.23
RFX3P48380 MIR6504-201ENST00000613520 61 ntBASIC1.09□□□□□ -2.23
RFX3P48380 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.09□□□□□ -2.23
RFX3P48380 AC015540.1-201ENST00000615828 501 ntBASIC1.09□□□□□ -2.23
RFX3P48380 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.09□□□□□ -2.23
RFX3P48380 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.09□□□□□ -2.24
RFX3P48380 Y_RNA.38-201ENST00000362617 102 ntBASIC1.08□□□□□ -2.24
RFX3P48380 U3.8-201ENST00000363675 217 ntBASIC1.08□□□□□ -2.24
RFX3P48380 RNU6-280P-201ENST00000364145 104 ntBASIC1.08□□□□□ -2.24
RFX3P48380 Y_RNA.212-201ENST00000364177 102 ntBASIC1.08□□□□□ -2.24
RFX3P48380 Y_RNA.319-201ENST00000365138 92 ntBASIC1.08□□□□□ -2.24
RFX3P48380 Y_RNA.517-201ENST00000384551 106 ntBASIC1.08□□□□□ -2.24
RFX3P48380 MIR513A1-201ENST00000385138 129 ntBASIC1.08□□□□□ -2.24
RFX3P48380 RNA5SP323-201ENST00000391094 133 ntBASIC1.08□□□□□ -2.24
RFX3P48380 RNU6-332P-201ENST00000391193 108 ntBASIC1.08□□□□□ -2.24
RFX3P48380 AL356776.1-201ENST00000406574 447 ntBASIC1.08□□□□□ -2.24
RFX3P48380 MIR1276-201ENST00000408707 83 ntBASIC1.08□□□□□ -2.24
RFX3P48380 SNX2P2-201ENST00000424553 323 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms