Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH2P43246 MIR1273D-201ENST00000577266 86 ntBASIC2.03□□□□□ -2.08
MSH2P43246 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.03□□□□□ -2.08
MSH2P43246 MZT1P2-201ENST00000604387 248 ntBASIC2.03□□□□□ -2.08
MSH2P43246 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH2P43246 AL078596.1-201ENST00000624856 447 ntBASIC2.03□□□□□ -2.08
MSH2P43246 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
MSH2P43246 Y_RNA.431-201ENST00000384086 102 ntBASIC2.02□□□□□ -2.09
MSH2P43246 RNU6-975P-201ENST00000384296 105 ntBASIC2.02□□□□□ -2.09
MSH2P43246 Y_RNA.592-201ENST00000410274 109 ntBASIC2.02□□□□□ -2.09
MSH2P43246 RNU6-1001P-201ENST00000411265 100 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AC114482.1-201ENST00000418010 247 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AC099799.1-201ENST00000439809 192 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AC010095.1-201ENST00000443543 144 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AL357134.1-201ENST00000445848 426 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.02□□□□□ -2.09
MSH2P43246 AC067942.3-201ENST00000512025 362 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AC144568.1-201ENST00000520139 137 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH2P43246 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH2P43246 MIR3169-201ENST00000578032 83 ntBASIC2.02□□□□□ -2.09
MSH2P43246 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH2P43246 AC012493.3-201ENST00000604494 112 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AL050343.2-201ENST00000607338 280 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH2P43246 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.02□□□□□ -2.09
MSH2P43246 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.02□□□□□ -2.09
MSH2P43246 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
MSH2P43246 MTND5P35-201ENST00000557537 1720 ntBASIC2.02□□□□□ -2.09
MSH2P43246 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
MSH2P43246 AC245060.5-201ENST00000610778 3293 ntBASIC2.01□□□□□ -2.09
MSH2P43246 RNU6-797P-201ENST00000363101 109 ntBASIC2.01□□□□□ -2.09
MSH2P43246 RNU6-879P-201ENST00000364328 108 ntBASIC2.01□□□□□ -2.09
MSH2P43246 SNORD87-201ENST00000364849 89 ntBASIC2.01□□□□□ -2.09
MSH2P43246 Y_RNA.314-201ENST00000365114 102 ntBASIC2.01□□□□□ -2.09
MSH2P43246 Y_RNA.415-201ENST00000384012 112 ntBASIC2.01□□□□□ -2.09
MSH2P43246 Y_RNA.419-201ENST00000384041 102 ntBASIC2.01□□□□□ -2.09
MSH2P43246 SNORA70B-201ENST00000384210 135 ntBASIC2.01□□□□□ -2.09
MSH2P43246 MIR329-1-201ENST00000385028 80 ntBASIC2.01□□□□□ -2.09
MSH2P43246 RN7SKP223-201ENST00000410582 62 ntBASIC2.01□□□□□ -2.09
MSH2P43246 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.01□□□□□ -2.09
MSH2P43246 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.01□□□□□ -2.09
MSH2P43246 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.01□□□□□ -2.09
MSH2P43246 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.01□□□□□ -2.09
MSH2P43246 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.01□□□□□ -2.09
MSH2P43246 AC027575.1-201ENST00000481064 460 ntBASIC2.01□□□□□ -2.09
MSH2P43246 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.01□□□□□ -2.09
MSH2P43246 RNU6-948P-201ENST00000516374 107 ntBASIC2.01□□□□□ -2.09
MSH2P43246 Y_RNA.683-201ENST00000516508 93 ntBASIC2.01□□□□□ -2.09
MSH2P43246 RNU2-34P-201ENST00000516534 121 ntBASIC2.01□□□□□ -2.09
MSH2P43246 MIR2355-201ENST00000517199 87 ntBASIC2.01□□□□□ -2.09
MSH2P43246 AC022868.1-201ENST00000517767 391 ntBASIC2.01□□□□□ -2.09
MSH2P43246 IGKV3-31-201ENST00000523109 329 ntBASIC2.01□□□□□ -2.09
MSH2P43246 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.01□□□□□ -2.09
MSH2P43246 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
MSH2P43246 RNA5SP361-201ENST00000362686 118 ntBASIC2□□□□□ -2.09
MSH2P43246 RNU6-1145P-201ENST00000384246 107 ntBASIC2□□□□□ -2.09
MSH2P43246 AL139156.1-201ENST00000412785 841 ntBASIC2□□□□□ -2.09
MSH2P43246 AC074290.1-201ENST00000448883 135 ntBASIC2□□□□□ -2.09
MSH2P43246 AC016717.1-201ENST00000448918 286 ntBASIC2□□□□□ -2.09
MSH2P43246 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2□□□□□ -2.09
MSH2P43246 RNVU1-2-201ENST00000516326 135 ntBASIC2□□□□□ -2.09
MSH2P43246 RNU6-856P-201ENST00000516959 98 ntBASIC2□□□□□ -2.09
MSH2P43246 AK6P2-201ENST00000549020 471 ntBASIC2□□□□□ -2.09
MSH2P43246 MIR5089-201ENST00000580047 84 ntBASIC2□□□□□ -2.09
MSH2P43246 MIR4713-201ENST00000582691 75 ntBASIC2□□□□□ -2.09
MSH2P43246 Y_RNA.783-201ENST00000613546 102 ntBASIC2□□□□□ -2.09
MSH2P43246 AC091925.1-201ENST00000623204 462 ntBASIC2□□□□□ -2.09
MSH2P43246 Y_RNA.5-201ENST00000362334 102 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNU6-1301P-201ENST00000362724 104 ntBASIC1.99□□□□□ -2.09
MSH2P43246 Y_RNA.197-201ENST00000364004 102 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNY3P11-201ENST00000364153 102 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNU4-42P-201ENST00000364738 142 ntBASIC1.99□□□□□ -2.09
MSH2P43246 Y_RNA.428-201ENST00000384078 102 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNU6-318P-201ENST00000384283 103 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNU6-1235P-201ENST00000384559 107 ntBASIC1.99□□□□□ -2.09
MSH2P43246 Y_RNA.535-201ENST00000384612 99 ntBASIC1.99□□□□□ -2.09
MSH2P43246 MIR548B-201ENST00000385247 97 ntBASIC1.99□□□□□ -2.09
MSH2P43246 SNORA48.1-201ENST00000390879 135 ntBASIC1.99□□□□□ -2.09
MSH2P43246 MTND4P28-201ENST00000426217 387 ntBASIC1.99□□□□□ -2.09
MSH2P43246 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.99□□□□□ -2.09
MSH2P43246 NDUFB4P10-201ENST00000452541 359 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNU7-169P-201ENST00000459456 61 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNU6-498P-201ENST00000459468 107 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNU7-57P-201ENST00000459540 60 ntBASIC1.99□□□□□ -2.09
MSH2P43246 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.99□□□□□ -2.09
MSH2P43246 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.99□□□□□ -2.09
MSH2P43246 RNU6-1170P-201ENST00000515974 106 ntBASIC1.99□□□□□ -2.09
MSH2P43246 RNU6-976P-201ENST00000516086 111 ntBASIC1.99□□□□□ -2.09
MSH2P43246 SNORD116.3-201ENST00000517176 78 ntBASIC1.99□□□□□ -2.09
MSH2P43246 AL080274.1-201ENST00000605565 220 ntBASIC1.99□□□□□ -2.09
MSH2P43246 AC138305.3-201ENST00000624988 240 ntBASIC1.99□□□□□ -2.09
MSH2P43246 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
MSH2P43246 AL159152.1-201ENST00000635019 2587 ntBASIC1.98□□□□□ -2.09
MSH2P43246 U3.8-201ENST00000363675 217 ntBASIC1.98□□□□□ -2.09
MSH2P43246 Y_RNA.252-201ENST00000364556 101 ntBASIC1.98□□□□□ -2.09
MSH2P43246 Y_RNA.496-201ENST00000384444 101 ntBASIC1.98□□□□□ -2.09
MSH2P43246 SNORA64-201ENST00000384674 134 ntBASIC1.98□□□□□ -2.09
MSH2P43246 AL023284.1-201ENST00000403956 276 ntBASIC1.98□□□□□ -2.09
MSH2P43246 Y_RNA.595-201ENST00000410403 105 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms