Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Y_RNA.252-201ENST00000364556 101 ntBASIC1.8□□□□□ -2.12
SOX3P41225 SNORD42.2-201ENST00000365570 69 ntBASIC1.8□□□□□ -2.12
SOX3P41225 Y_RNA.395-201ENST00000383945 109 ntBASIC1.8□□□□□ -2.12
SOX3P41225 Y_RNA.428-201ENST00000384078 102 ntBASIC1.8□□□□□ -2.12
SOX3P41225 RNU6-474P-201ENST00000384243 107 ntBASIC1.8□□□□□ -2.12
SOX3P41225 MIR518A2-201ENST00000384966 87 ntBASIC1.8□□□□□ -2.12
SOX3P41225 AC019129.1-201ENST00000403786 261 ntBASIC1.8□□□□□ -2.12
SOX3P41225 Y_RNA.592-201ENST00000410274 109 ntBASIC1.8□□□□□ -2.12
SOX3P41225 RNA5SP504-201ENST00000410676 117 ntBASIC1.8□□□□□ -2.12
SOX3P41225 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.8□□□□□ -2.12
SOX3P41225 AC018865.2-201ENST00000423631 129 ntBASIC1.8□□□□□ -2.12
SOX3P41225 AC091179.3-201ENST00000474761 144 ntBASIC1.8□□□□□ -2.12
SOX3P41225 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.8□□□□□ -2.12
SOX3P41225 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.8□□□□□ -2.12
SOX3P41225 SNORD116.3-201ENST00000517176 78 ntBASIC1.8□□□□□ -2.12
SOX3P41225 AC093023.1-201ENST00000547375 507 ntBASIC1.8□□□□□ -2.12
SOX3P41225 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.8□□□□□ -2.12
SOX3P41225 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.8□□□□□ -2.12
SOX3P41225 AC125232.2-201ENST00000592457 143 ntBASIC1.8□□□□□ -2.12
SOX3P41225 MZT1P2-201ENST00000604387 248 ntBASIC1.8□□□□□ -2.12
SOX3P41225 SNORD11B-201ENST00000607707 90 ntBASIC1.8□□□□□ -2.12
SOX3P41225 MIR7843-201ENST00000622274 79 ntBASIC1.8□□□□□ -2.12
SOX3P41225 AC138305.3-201ENST00000624988 240 ntBASIC1.8□□□□□ -2.12
SOX3P41225 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.8□□□□□ -2.12
SOX3P41225 ZNF355P-201ENST00000427301 3216 ntBASIC1.8□□□□□ -2.12
SOX3P41225 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.8□□□□□ -2.12
SOX3P41225 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.8□□□□□ -2.12
SOX3P41225 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
SOX3P41225 AL356292.1-201ENST00000283110 373 ntBASIC1.79□□□□□ -2.12
SOX3P41225 RNU6-1305P-201ENST00000364353 104 ntBASIC1.79□□□□□ -2.12
SOX3P41225 Y_RNA.314-201ENST00000365114 102 ntBASIC1.79□□□□□ -2.12
SOX3P41225 RNU6-1145P-201ENST00000384246 107 ntBASIC1.79□□□□□ -2.12
SOX3P41225 MIR329-1-201ENST00000385028 80 ntBASIC1.79□□□□□ -2.12
SOX3P41225 AL033519.2-201ENST00000403958 392 ntBASIC1.79□□□□□ -2.12
SOX3P41225 RPS20P15-201ENST00000412792 311 ntBASIC1.79□□□□□ -2.12
SOX3P41225 AL354751.2-201ENST00000415471 210 ntBASIC1.79□□□□□ -2.12
SOX3P41225 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.79□□□□□ -2.12
SOX3P41225 AC007677.1-201ENST00000445757 515 ntBASIC1.79□□□□□ -2.12
SOX3P41225 CHEK2P4-201ENST00000450340 246 ntBASIC1.79□□□□□ -2.12
SOX3P41225 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.79□□□□□ -2.12
SOX3P41225 RNU1-131P-201ENST00000458943 161 ntBASIC1.79□□□□□ -2.12
SOX3P41225 Y_RNA.639-201ENST00000458981 102 ntBASIC1.79□□□□□ -2.12
SOX3P41225 HMGN2P9-201ENST00000476875 229 ntBASIC1.79□□□□□ -2.12
SOX3P41225 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.79□□□□□ -2.12
SOX3P41225 Y_RNA.701-201ENST00000516812 110 ntBASIC1.79□□□□□ -2.12
SOX3P41225 AC022868.1-201ENST00000517767 391 ntBASIC1.79□□□□□ -2.12
SOX3P41225 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.79□□□□□ -2.12
SOX3P41225 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.79□□□□□ -2.12
SOX3P41225 MIR4753-201ENST00000585119 83 ntBASIC1.79□□□□□ -2.12
SOX3P41225 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.79□□□□□ -2.12
SOX3P41225 AC008873.1-201ENST00000625051 138 ntBASIC1.79□□□□□ -2.12
SOX3P41225 AC068205.3-201ENST00000636385 468 ntBASIC1.79□□□□□ -2.12
SOX3P41225 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
SOX3P41225 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.78□□□□□ -2.12
SOX3P41225 AC009487.4-201ENST00000624969 3585 ntBASIC1.78□□□□□ -2.12
SOX3P41225 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.78□□□□□ -2.12
SOX3P41225 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.78□□□□□ -2.12
SOX3P41225 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.78□□□□□ -2.12
SOX3P41225 MTND5P35-201ENST00000557537 1720 ntBASIC1.78□□□□□ -2.12
SOX3P41225 RNU1-58P-201ENST00000362413 163 ntBASIC1.78□□□□□ -2.12
SOX3P41225 SNORD115-3-201ENST00000363100 82 ntBASIC1.78□□□□□ -2.12
SOX3P41225 Y_RNA.112-201ENST00000363250 102 ntBASIC1.78□□□□□ -2.12
SOX3P41225 RNY3P11-201ENST00000364153 102 ntBASIC1.78□□□□□ -2.12
SOX3P41225 Y_RNA.216-201ENST00000364205 93 ntBASIC1.78□□□□□ -2.12
SOX3P41225 RNU6-318P-201ENST00000384283 103 ntBASIC1.78□□□□□ -2.12
SOX3P41225 RNU6-975P-201ENST00000384296 105 ntBASIC1.78□□□□□ -2.12
SOX3P41225 RNU6-160P-201ENST00000384591 107 ntBASIC1.78□□□□□ -2.12
SOX3P41225 RNU6-308P-201ENST00000390957 107 ntBASIC1.78□□□□□ -2.12
SOX3P41225 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
SOX3P41225 Y_RNA.605-201ENST00000410577 105 ntBASIC1.78□□□□□ -2.12
SOX3P41225 RNA5SP489-201ENST00000410986 109 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AL356379.1-201ENST00000414105 126 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AL445685.2-201ENST00000422551 342 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.78□□□□□ -2.12
SOX3P41225 MTND1P14-201ENST00000427400 950 ntBASIC1.78□□□□□ -2.12
SOX3P41225 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.78□□□□□ -2.12
SOX3P41225 AL137792.2-201ENST00000443484 235 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.78□□□□□ -2.12
SOX3P41225 NDUFB4P10-201ENST00000452541 359 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AC010531.2-201ENST00000465012 153 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AC067942.3-201ENST00000512025 362 ntBASIC1.78□□□□□ -2.12
SOX3P41225 Y_RNA.683-201ENST00000516508 93 ntBASIC1.78□□□□□ -2.12
SOX3P41225 RNU6-911P-201ENST00000516523 104 ntBASIC1.78□□□□□ -2.12
SOX3P41225 MIR514B-201ENST00000516774 80 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AC091144.1-201ENST00000519573 138 ntBASIC1.78□□□□□ -2.12
SOX3P41225 CYCSP23-201ENST00000519781 313 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.78□□□□□ -2.12
SOX3P41225 AC110588.1-201ENST00000559699 137 ntBASIC1.78□□□□□ -2.12
SOX3P41225 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.78□□□□□ -2.12
SOX3P41225 AC090971.5-201ENST00000621102 293 ntBASIC1.78□□□□□ -2.12
SOX3P41225 uc_338.22-201ENST00000622722 187 ntBASIC1.78□□□□□ -2.12
SOX3P41225 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
SOX3P41225 Y_RNA.11-201ENST00000362375 109 ntBASIC1.77□□□□□ -2.13
SOX3P41225 RNU6-1301P-201ENST00000362724 104 ntBASIC1.77□□□□□ -2.13
SOX3P41225 RNU6-727P-201ENST00000363592 107 ntBASIC1.77□□□□□ -2.13
SOX3P41225 RNU6-879P-201ENST00000364328 108 ntBASIC1.77□□□□□ -2.13
SOX3P41225 SNORA16B-201ENST00000364674 135 ntBASIC1.77□□□□□ -2.13
SOX3P41225 RNU4-42P-201ENST00000364738 142 ntBASIC1.77□□□□□ -2.13
SOX3P41225 RNU1-115P-201ENST00000365329 160 ntBASIC1.77□□□□□ -2.13
SOX3P41225 RNU6-418P-201ENST00000384035 107 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms