Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC069257.2-201ENST00000441819 155 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 AC074290.1-201ENST00000448883 135 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 MTND1P17-201ENST00000448961 204 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.26□□□□□ -2.21
SHMT2P34897 snoU13.9-201ENST00000458927 103 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 AC004223.1-201ENST00000479840 271 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 RNA5SP481-201ENST00000516814 122 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 RNU6-273P-201ENST00000516937 96 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 RNU6-58P-201ENST00000517143 103 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.26□□□□□ -2.21
SHMT2P34897 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.26□□□□□ -2.21
SHMT2P34897 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.26□□□□□ -2.21
SHMT2P34897 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.26□□□□□ -2.21
SHMT2P34897 MIR3660-201ENST00000584845 100 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 BNIP3P10-201ENST00000605360 577 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 AL050343.2-201ENST00000607338 280 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 SNORD11B-201ENST00000607707 90 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
SHMT2P34897 snoZ196.1-201ENST00000625269 89 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 AC095038.3-201ENST00000634439 195 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 MIR3662-201ENST00000637030 95 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
SHMT2P34897 MTND4P12-201ENST00000498999 1377 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 RNU6-873P-201ENST00000363833 107 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 Y_RNA.287-201ENST00000364853 94 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 SNORA72.2-201ENST00000365028 127 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 RNU6-17P-201ENST00000384245 107 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 RNU6-18P-201ENST00000384527 107 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 SNORA40.6-201ENST00000391153 128 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 SNORD115-47-201ENST00000391226 86 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.25□□□□□ -2.21
SHMT2P34897 AC009161.1-201ENST00000417306 376 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.25□□□□□ -2.21
SHMT2P34897 AL445305.1-201ENST00000432577 575 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 RNU6-221P-201ENST00000459541 99 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 RPL36AP21-201ENST00000490372 323 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 AP003033.1-201ENST00000527244 415 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.25□□□□□ -2.21
SHMT2P34897 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.25□□□□□ -2.21
SHMT2P34897 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.25□□□□□ -2.21
SHMT2P34897 AC100821.1-201ENST00000523153 2479 ntBASIC1.25□□□□□ -2.21
SHMT2P34897 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SHMT2P34897 Y_RNA.573-201ENST00000384763 105 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 MIR548F1-201ENST00000408667 84 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 SDAD1P3-201ENST00000427380 333 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 AC015922.2-201ENST00000435593 184 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.24□□□□□ -2.21
SHMT2P34897 SNORA25.14-201ENST00000516481 132 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 AC025647.1-201ENST00000517879 253 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 AC090821.2-201ENST00000523552 176 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.24□□□□□ -2.21
SHMT2P34897 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.24□□□□□ -2.21
SHMT2P34897 AK6P2-201ENST00000549020 471 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 AC009248.2-201ENST00000619826 254 ntBASIC1.24□□□□□ -2.21
SHMT2P34897 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.24□□□□□ -2.21
SHMT2P34897 RNU6-137P-201ENST00000363680 108 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 SNORA4.2-201ENST00000365313 147 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 RNU6-596P-201ENST00000365395 98 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 Y_RNA.453-201ENST00000384223 109 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 Y_RNA.533-201ENST00000384596 114 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 RNU6-417P-201ENST00000384712 107 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 MIR515-2-201ENST00000384883 83 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 MIR515-1-201ENST00000384884 83 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.23□□□□□ -2.21
SHMT2P34897 FTH1P12-201ENST00000432137 551 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 AC073910.1-201ENST00000445047 438 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 snoU13.27-201ENST00000459278 104 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 AC091179.3-201ENST00000474761 144 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 Y_RNA.655-201ENST00000515919 96 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 RNU6-1146P-201ENST00000516282 102 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 RNU6-1198P-201ENST00000516904 67 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 RNA5SP454-201ENST00000517231 127 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 UBL5P4-201ENST00000562584 236 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 MIR4742-201ENST00000581069 85 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 MIR4422-201ENST00000581938 83 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 AL359821.1-201ENST00000605519 182 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.23□□□□□ -2.21
SHMT2P34897 Y_RNA.67-201ENST00000362870 100 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 RNU6-1059P-201ENST00000363752 98 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 RNU6-271P-201ENST00000363858 105 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 SNORD87-201ENST00000364849 89 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 RNU6-159P-201ENST00000391080 106 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
SHMT2P34897 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.22□□□□□ -2.21
SHMT2P34897 AC008134.1-201ENST00000420943 193 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 RPS26P55-201ENST00000471178 356 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 RNU6-566P-201ENST00000516790 107 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 AC008269.2-201ENST00000561915 1105 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 MIR6078-201ENST00000611069 100 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.22□□□□□ -2.21
SHMT2P34897 ICE2P2-201ENST00000483823 2787 ntBASIC1.22□□□□□ -2.21
SHMT2P34897 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SHMT2P34897 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
SHMT2P34897 Y_RNA.301-201ENST00000364990 103 ntBASIC1.21□□□□□ -2.22
SHMT2P34897 Y_RNA.327-201ENST00000365201 102 ntBASIC1.21□□□□□ -2.22
SHMT2P34897 Y_RNA.415-201ENST00000384012 112 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms