Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.31□□□□□ -2.36
HLA-DMBP28068 RNU6-945P-201ENST00000383947 107 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 RNU6-424P-201ENST00000384367 105 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 RNU6-163P-201ENST00000384396 106 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 RNU6-1186P-201ENST00000410429 97 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 RNA5SP504-201ENST00000410676 117 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 RNU6-195P-201ENST00000411352 109 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.31□□□□□ -2.36
HLA-DMBP28068 Z99497.1-201ENST00000421282 135 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC0.31□□□□□ -2.36
HLA-DMBP28068 snoU13.25-201ENST00000458945 104 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 RNU4-57P-201ENST00000515980 135 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 AL137161.1-201ENST00000532231 390 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.31□□□□□ -2.36
HLA-DMBP28068 AC004223.4-201ENST00000612426 332 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 SCARNA4-201ENST00000629045 128 ntBASIC0.31□□□□□ -2.36
HLA-DMBP28068 Y_RNA.205-201ENST00000364128 113 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.3□□□□□ -2.36
HLA-DMBP28068 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.3□□□□□ -2.36
HLA-DMBP28068 RPL31P35-201ENST00000431058 377 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 STAG3L5P-204ENST00000443759 179 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.3□□□□□ -2.36
HLA-DMBP28068 U7.7-201ENST00000459276 60 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 RNU7-138P-201ENST00000459479 64 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 RNU6-430P-201ENST00000517078 107 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 AC106038.2-201ENST00000520706 568 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 AC027419.1-201ENST00000522976 328 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 AC025627.3-201ENST00000582078 182 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 FGF7P1-201ENST00000582820 288 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 AC005730.3-201ENST00000583067 366 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 MIR548AB-201ENST00000584917 84 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 Z84480.1-201ENST00000605131 311 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 AL391834.2-201ENST00000609982 546 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 AL096861.1-201ENST00000610899 123 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 U2.17-201ENST00000611454 95 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 MIR6779-201ENST00000617283 64 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 AC010487.4-201ENST00000637027 61 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.3□□□□□ -2.36
HLA-DMBP28068 SNORA50A-201ENST00000384225 134 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 SNORD73A-201ENST00000386062 65 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 MIR320B2-201ENST00000408479 138 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.29□□□□□ -2.36
HLA-DMBP28068 AC244023.1-201ENST00000426884 112 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 CALM2P4-201ENST00000430810 426 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 RPS20P10-201ENST00000451209 253 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 NDUFB4P10-201ENST00000452541 359 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 AC233266.1-201ENST00000454518 96 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.29□□□□□ -2.36
HLA-DMBP28068 AC092989.1-201ENST00000481235 277 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 AF186996.7-201ENST00000492781 209 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.29□□□□□ -2.36
HLA-DMBP28068 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.29□□□□□ -2.36
HLA-DMBP28068 AC242498.1-201ENST00000604134 111 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 AL360219.1-201ENST00000610230 366 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 AC242852.1-201ENST00000612151 96 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 AC243994.1-201ENST00000618627 109 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 AC244015.1-201ENST00000622301 99 ntBASIC0.29□□□□□ -2.36
HLA-DMBP28068 VTRNA1-3-201ENST00000365645 89 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 U8.16-201ENST00000391279 133 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 AL031577.2-201ENST00000404133 280 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 SNORD99-201ENST00000408612 74 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 MIR1185-2-201ENST00000408687 86 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.28□□□□□ -2.36
HLA-DMBP28068 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.28□□□□□ -2.36
HLA-DMBP28068 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
HLA-DMBP28068 TPT1P7-201ENST00000458300 517 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 LINC01399-202ENST00000458450 244 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 AC005178.1-201ENST00000508392 440 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 RNA5SP454-201ENST00000517231 127 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 AC022868.1-201ENST00000517767 391 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 MRPS36P4-201ENST00000534436 298 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.28□□□□□ -2.36
HLA-DMBP28068 SUB1P2-201ENST00000556401 297 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.28□□□□□ -2.36
HLA-DMBP28068 MIR1273G-201ENST00000577677 100 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 AC004223.2-201ENST00000590309 544 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 AP001506.1-201ENST00000615444 211 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 AC068787.1-201ENST00000623908 691 ntBASIC0.28□□□□□ -2.36
HLA-DMBP28068 AC106754.1-201ENST00000562632 1513 ntBASIC0.28□□□□□ -2.37
HLA-DMBP28068 RNU4-28P-201ENST00000364739 141 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 RNU6-1237P-201ENST00000384777 107 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 SNORD89-201ENST00000390981 114 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 RNU6-903P-201ENST00000391270 109 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 AL593851.1-201ENST00000426171 157 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.27□□□□□ -2.37
HLA-DMBP28068 MTND3P9-201ENST00000429526 346 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 AC092423.1-201ENST00000430165 186 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 OR9P1P-201ENST00000496431 281 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.27□□□□□ -2.37
HLA-DMBP28068 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.27□□□□□ -2.37
HLA-DMBP28068 MTATP6P9-201ENST00000515039 680 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 RN7SKP12-201ENST00000516275 143 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 MTND1P5-201ENST00000517906 940 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 MRPS36P3-201ENST00000519284 130 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 FRG2DP-202ENST00000566967 323 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 AC245014.2-201ENST00000603689 287 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 AC246785.4-201ENST00000605374 287 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 AC092354.1-201ENST00000606057 376 ntBASIC0.27□□□□□ -2.37
HLA-DMBP28068 RMST_3.1-201ENST00000611651 109 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms