Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNA5SP213-201ENST00000391031 106 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 RNU6-159P-201ENST00000391080 106 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 RNU1-139P-201ENST00000391307 165 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 RNU2-2P-201ENST00000410396 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 AC007215.1-201ENST00000464893 276 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 RNU6-1114P-201ENST00000516022 107 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 AC144568.1-201ENST00000520139 137 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.82□□□□□ -2.12
HOXD4P09016 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.82□□□□□ -2.12
HOXD4P09016 AC090517.1-201ENST00000569307 266 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 AC006600.1-201ENST00000572529 153 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.812-201ENST00000610788 101 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.15-201ENST00000611544 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.16-201ENST00000613119 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 MIR6845-201ENST00000613182 61 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.12-201ENST00000613778 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.784-201ENST00000613803 101 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.20-201ENST00000613956 192 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.9-201ENST00000615427 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.11-201ENST00000616345 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.787-201ENST00000616522 101 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.2-201ENST00000616535 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.780-201ENST00000617336 101 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.3-201ENST00000617785 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.19-201ENST00000618602 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 RNU2-1-201ENST00000618664 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.801-201ENST00000619005 101 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.6-201ENST00000619225 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.5-201ENST00000619465 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 U2.10-201ENST00000620268 191 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.82□□□□□ -2.12
HOXD4P09016 AL606534.2-204ENST00000635008 178 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 ZNF204P-201ENST00000416749 2397 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
HOXD4P09016 RNU6-137P-201ENST00000363680 108 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 RNU6-873P-201ENST00000363833 107 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 Y_RNA.202-201ENST00000364083 110 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 AC114482.1-201ENST00000418010 247 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXD4P09016 EIF1P2-201ENST00000428233 350 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 AC027124.2-201ENST00000428249 105 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXD4P09016 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.81□□□□□ -2.12
HOXD4P09016 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.81□□□□□ -2.12
HOXD4P09016 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 SNORA25.10-201ENST00000515926 124 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 MIR449C-201ENST00000516047 92 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 RNA5SP54-201ENST00000516951 92 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXD4P09016 AL442663.2-201ENST00000554385 511 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 MIR4529-201ENST00000578110 78 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 MIR5695-201ENST00000579717 85 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 MIR5188-201ENST00000583467 113 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.81□□□□□ -2.12
HOXD4P09016 AL132822.1-201ENST00000617063 513 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 U2.1-201ENST00000618978 145 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 SDR42E1P4-201ENST00000620894 481 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.81□□□□□ -2.12
HOXD4P09016 AC091812.1-201ENST00000432235 1948 ntBASIC1.81□□□□□ -2.12
HOXD4P09016 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
HOXD4P09016 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.81□□□□□ -2.12
HOXD4P09016 AC005592.1-201ENST00000566527 1640 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 RNU1-17P-201ENST00000363022 152 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 SNORA25B-201ENST00000365507 128 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 SNORA18.2-201ENST00000383865 132 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 MRPL42P3-201ENST00000401492 326 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 RNA5SP247-201ENST00000411181 105 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 CYCSP49-201ENST00000420810 319 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.8□□□□□ -2.12
HOXD4P09016 AC055731.1-201ENST00000474387 401 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AC107032.1-201ENST00000485945 480 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AC132942.1-201ENST00000486753 483 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 SCARNA15.1-201ENST00000516384 125 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 RNU6-965P-201ENST00000516721 96 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 RNU6-1198P-201ENST00000516904 67 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 RNU2-19P-201ENST00000517288 84 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AC022868.1-201ENST00000517767 391 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AC034114.1-201ENST00000520293 285 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AC018630.3-201ENST00000542637 96 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AC125232.2-201ENST00000592457 143 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AC005562.2-201ENST00000618264 111 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 AL162373.1-201ENST00000620433 407 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 BX322639.1-202ENST00000423987 2213 ntBASIC1.8□□□□□ -2.12
HOXD4P09016 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.8□□□□□ -2.12
HOXD4P09016 RNA5SP361-201ENST00000362686 118 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 RNU6-281P-201ENST00000384212 103 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 RNU6-708P-201ENST00000384217 107 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 MIR628-201ENST00000385229 95 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 SNORA40.19-201ENST00000390846 128 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 Y_RNA.645-201ENST00000391229 102 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
HOXD4P09016 AL590004.1-201ENST00000405321 300 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 RNU6-1001P-201ENST00000411265 100 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 AC004866.1-201ENST00000411748 78 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 CBX3P6-201ENST00000430257 527 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXD4P09016 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXD4P09016 MTCO3P8-201ENST00000453691 755 ntBASIC1.79□□□□□ -2.12
HOXD4P09016 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 160.5 ms