Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SNORA77B-201ENST00000578179 125 ntBASIC0.69□□□□□ -2.3
COL4A1P02462 MTND1P15-201ENST00000579262 949 ntBASIC0.69□□□□□ -2.3
COL4A1P02462 MIR3672-201ENST00000584290 82 ntBASIC0.69□□□□□ -2.3
COL4A1P02462 AC109347.2-201ENST00000610220 349 ntBASIC0.69□□□□□ -2.3
COL4A1P02462 MIR8076-201ENST00000611401 83 ntBASIC0.69□□□□□ -2.3
COL4A1P02462 AC139792.3-201ENST00000623525 224 ntBASIC0.69□□□□□ -2.3
COL4A1P02462 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
COL4A1P02462 RNU6-1085P-201ENST00000363576 107 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 SNORA22-201ENST00000383907 134 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 RNU6-1119P-201ENST00000384349 108 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 SNORA22C-201ENST00000384614 134 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
COL4A1P02462 RNU4-55P-201ENST00000410731 137 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 RPL37P10-201ENST00000412884 288 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.68□□□□□ -2.3
COL4A1P02462 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.68□□□□□ -2.3
COL4A1P02462 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.68□□□□□ -2.3
COL4A1P02462 Y_RNA.654-201ENST00000497848 106 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 AC093534.1-201ENST00000504977 132 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 CCDC34P1-201ENST00000507441 517 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 AC091133.4-201ENST00000511142 308 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 SCOCP1-201ENST00000554676 349 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 MIR5583-1-201ENST00000580941 59 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.68□□□□□ -2.3
COL4A1P02462 AL162413.1-201ENST00000603198 110 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 AC092747.3-201ENST00000603769 301 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 AP000907.4-201ENST00000604143 237 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 AL121757.2-201ENST00000611223 313 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.68□□□□□ -2.3
COL4A1P02462 AC067863.3-201ENST00000624172 122 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 SNORA43.4-201ENST00000629559 138 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 MIR338-201ENST00000636369 67 ntBASIC0.68□□□□□ -2.3
COL4A1P02462 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL4A1P02462 AC010615.1-201ENST00000594254 1764 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
COL4A1P02462 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.67□□□□□ -2.3
COL4A1P02462 Y_RNA.51-201ENST00000362725 102 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 RNU6-23P-201ENST00000363283 107 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 RNU6-414P-201ENST00000363705 104 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 RNU6-1187P-201ENST00000364771 110 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 RNU6-417P-201ENST00000384712 107 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 MIR194-1-201ENST00000384892 85 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 SNORA48.1-201ENST00000390879 135 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 MIR1283-1-201ENST00000408494 87 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AL663109.1-201ENST00000411498 844 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC0.67□□□□□ -2.3
COL4A1P02462 USP9YP14-201ENST00000430663 563 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 UBE2V1P8-201ENST00000437166 265 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 HSPE1P9-201ENST00000440046 311 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.67□□□□□ -2.3
COL4A1P02462 RPS20P10-201ENST00000451209 253 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 OR2AQ1P-201ENST00000451972 200 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AC016925.1-201ENST00000458303 298 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AC087477.1-201ENST00000465747 340 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.67□□□□□ -2.3
COL4A1P02462 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.67□□□□□ -2.3
COL4A1P02462 AC107401.1-201ENST00000503426 685 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AL118558.2-201ENST00000556294 238 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 MIR5696-201ENST00000578474 85 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 CTHRC1P1-201ENST00000605383 469 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AP001330.5-201ENST00000607176 411 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AC092807.2-201ENST00000609367 243 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 RMST_3.1-201ENST00000611651 109 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 AC137590.2-201ENST00000619709 240 ntBASIC0.67□□□□□ -2.3
COL4A1P02462 HSBP1P2-201ENST00000299671 229 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 Y_RNA.41-201ENST00000362646 102 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 Y_RNA.67-201ENST00000362870 100 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 RNU5B-2P-201ENST00000363036 113 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 Y_RNA.167-201ENST00000363735 109 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 SNORA67.2-201ENST00000384300 149 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 MIR549A-201ENST00000385268 96 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 SNORD37.1-201ENST00000390968 65 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 MIR300-201ENST00000401138 83 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 MIR1267-201ENST00000408723 78 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.66□□□□□ -2.3
COL4A1P02462 RNU7-57P-201ENST00000459540 60 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 AC010531.2-201ENST00000465012 153 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 AC083798.1-201ENST00000472671 131 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 RPL26P26-201ENST00000480251 434 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 AC011406.1-201ENST00000512440 370 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 RNU6-1041P-201ENST00000516254 102 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 RNU6-612P-201ENST00000516909 102 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.66□□□□□ -2.3
COL4A1P02462 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.66□□□□□ -2.3
COL4A1P02462 AP001485.1-201ENST00000604799 199 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 MIR3976-201ENST00000606807 139 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.66□□□□□ -2.3
COL4A1P02462 AC245008.1-201ENST00000608123 476 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 AL133215.3-201ENST00000609801 448 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 AC068205.3-201ENST00000636385 468 ntBASIC0.66□□□□□ -2.3
COL4A1P02462 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.66□□□□□ -2.3
COL4A1P02462 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.66□□□□□ -2.3
COL4A1P02462 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.65□□□□□ -2.3
COL4A1P02462 Y_RNA.38-201ENST00000362617 102 ntBASIC0.65□□□□□ -2.3
COL4A1P02462 RNU6-975P-201ENST00000384296 105 ntBASIC0.65□□□□□ -2.3
COL4A1P02462 Y_RNA.517-201ENST00000384551 106 ntBASIC0.65□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms