Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC080100.1-201ENST00000624239 5356 ntBASIC2.16□□□□□ -2.06
HOXC11O43248 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 Y_RNA.67-201ENST00000362870 100 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 SNORA8-201ENST00000384574 139 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 MIR764-201ENST00000390811 85 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 SNORA69.1-201ENST00000390904 137 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 RNA5SP504-201ENST00000410676 117 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC11O43248 AC008134.1-201ENST00000420943 193 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 AC244636.1-201ENST00000421152 228 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXC11O43248 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXC11O43248 AL591806.2-201ENST00000433122 173 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 ELOCP24-201ENST00000456370 334 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 Y_RNA.632-201ENST00000459189 102 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXC11O43248 RNVU1-2-201ENST00000516326 135 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 MIR2355-201ENST00000517199 87 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 AC144568.1-201ENST00000520139 137 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXC11O43248 MIR4299-201ENST00000577899 72 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 AC006001.4-201ENST00000622243 395 ntBASIC2.15□□□□□ -2.07
HOXC11O43248 MTND5P10-201ENST00000603719 1809 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 RNU6-874P-201ENST00000362390 105 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 MIR548B-201ENST00000385247 97 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
HOXC11O43248 RNU2-2P-201ENST00000410396 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 RNU6-1001P-201ENST00000411265 100 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 AC060773.1-201ENST00000421698 310 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 HMGN2P19-201ENST00000425149 265 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 RNU6-120P-201ENST00000516077 103 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 MIR5094-201ENST00000578766 85 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 MIR4769-201ENST00000584126 77 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.14□□□□□ -2.07
HOXC11O43248 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXC11O43248 U2.15-201ENST00000611544 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.16-201ENST00000613119 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.12-201ENST00000613778 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.20-201ENST00000613956 192 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.9-201ENST00000615427 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.11-201ENST00000616345 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.2-201ENST00000616535 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.3-201ENST00000617785 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.19-201ENST00000618602 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 RNU2-1-201ENST00000618664 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.6-201ENST00000619225 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.5-201ENST00000619465 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 U2.10-201ENST00000620268 191 ntBASIC2.14□□□□□ -2.07
HOXC11O43248 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
HOXC11O43248 RNU6-490P-201ENST00000362985 107 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 RNU1-96P-201ENST00000364163 162 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 SNORD116-29-201ENST00000384516 83 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 Y_RNA.605-201ENST00000410577 105 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 MTND3P22-201ENST00000510932 243 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 AC080078.3-201ENST00000605407 463 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 AC112487.2-201ENST00000637950 304 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 CENPCP1-201ENST00000533085 2578 ntBASIC2.13□□□□□ -2.07
HOXC11O43248 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
HOXC11O43248 AC073544.1-201ENST00000600110 1595 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 MIRLET7G-201ENST00000362280 84 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 RNU6-1266P-201ENST00000362794 105 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 RNU6-862P-201ENST00000362804 105 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 RNA5SP213-201ENST00000391031 106 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 HMGN2P34-201ENST00000437647 269 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 AC099799.1-201ENST00000439809 192 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 UQCRBP2-201ENST00000447827 297 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 RNU6-221P-201ENST00000459541 99 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 SNORD19B-201ENST00000459623 84 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 AC104435.1-201ENST00000483483 166 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXC11O43248 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.12□□□□□ -2.07
HOXC11O43248 AC015712.3-201ENST00000559380 164 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 AC125232.2-201ENST00000592457 143 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 AC069114.2-201ENST00000604699 304 ntBASIC2.12□□□□□ -2.07
HOXC11O43248 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXC11O43248 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXC11O43248 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXC11O43248 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
HOXC11O43248 Y_RNA.146-201ENST00000363549 102 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 Y_RNA.314-201ENST00000365114 102 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 RNU6-1240P-201ENST00000365155 104 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 MIR329-1-201ENST00000385028 80 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 MIR1185-2-201ENST00000408687 86 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 RNA5SP338-201ENST00000410495 85 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 AC022028.1-201ENST00000412054 408 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
HOXC11O43248 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXC11O43248 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXC11O43248 RPL23AP42-201ENST00000471152 471 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 AC108210.2-201ENST00000503681 201 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 Y_RNA.675-201ENST00000516389 149 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 AC093027.1-201ENST00000546698 429 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 AC002984.1-201ENST00000591692 448 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 AL353149.1-201ENST00000610667 244 ntBASIC2.11□□□□□ -2.07
HOXC11O43248 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
HOXC11O43248 AL356292.1-201ENST00000283110 373 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 RNU4-73P-201ENST00000363164 141 ntBASIC2.1□□□□□ -2.07
HOXC11O43248 Y_RNA.187-201ENST00000363918 113 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms