Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC104458.1-201ENST00000608243 463 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AC131159.1-201ENST00000621854 213 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 RNU6-343P-201ENST00000364709 104 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 RNU6-378P-201ENST00000384324 107 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 SNORA3B-201ENST00000391305 131 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 MIR4753-201ENST00000585119 83 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 AC006927.4-201ENST00000639187 543 ntBASIC-1.12□□□□□ -2.59
CCDC88BA6NC98 MTND5P33-201ENST00000571250 1450 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 Y_RNA.265-201ENST00000364677 108 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 RNU6-395P-201ENST00000365662 106 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 SNORA75B-201ENST00000384053 137 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 MIR7-1-201ENST00000384871 110 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 MIR526A1-201ENST00000384897 85 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 SPINT5P-201ENST00000448174 155 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 RPS29P27-201ENST00000463711 170 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 XACT-201ENST00000468762 497 ntTSL 5 BASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 SUMO2P5-201ENST00000506790 245 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 MIR4771-2-201ENST00000577758 74 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 MIR4771-1-201ENST00000582617 74 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 AC133794.1-201ENST00000602731 914 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 Z99497.2-201ENST00000603634 310 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 AC068792.1-201ENST00000621354 417 ntBASIC-1.13□□□□□ -2.59
CCDC88BA6NC98 RNU6-161P-201ENST00000363051 106 ntBASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 Y_RNA.534-201ENST00000384599 112 ntBASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 MIR1207-201ENST00000408249 87 ntBASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 AC093899.1-201ENST00000457984 376 ntBASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 RNU6-914P-201ENST00000516749 109 ntBASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 MTCO3P15-201ENST00000526563 574 ntBASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 DEFB130C-202ENST00000530001 230 ntBASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 RPL17P51-201ENST00000605218 238 ntBASIC-1.14□□□□□ -2.59
CCDC88BA6NC98 MIR300-201ENST00000401138 83 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 MIR548L-201ENST00000408303 86 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 MIR1283-1-201ENST00000408494 87 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 RNA5SP201-201ENST00000410316 124 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 MTCO2P23-201ENST00000425216 680 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 AC133104.1-201ENST00000429100 218 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 AL392103.1-201ENST00000447000 198 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 SCARNA18-201ENST00000459004 134 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 AC116562.3-201ENST00000506136 177 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 RNU6-63P-201ENST00000516690 95 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 RNU6-1261P-201ENST00000517194 104 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 U6.42-201ENST00000618440 107 ntBASIC-1.15□□□□□ -2.59
CCDC88BA6NC98 MIR549A-201ENST00000385268 96 ntBASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 AC107297.1-201ENST00000459991 176 ntBASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 AC138915.2-201ENST00000569776 97 ntBASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 AC090897.1-201ENST00000580909 226 ntBASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 MIR4676-201ENST00000583078 72 ntBASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 AC022893.3-201ENST00000607665 437 ntBASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 AL445264.1-201ENST00000621719 171 ntBASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 AC112204.3-201ENST00000623822 332 ntBASIC-1.16□□□□□ -2.59
CCDC88BA6NC98 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 RNU1-76P-201ENST00000362903 159 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 SNORD32A-201ENST00000364805 84 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 RNU6-40P-201ENST00000384254 107 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 VN1R87P-201ENST00000596706 487 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 MIR7107-201ENST00000611489 80 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 AC008250.2-201ENST00000615261 205 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 MIR6514-201ENST00000622549 70 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 AP000676.3-201ENST00000623299 569 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 SNORD38B-202ENST00000625943 69 ntBASIC-1.17□□□□□ -2.6
CCDC88BA6NC98 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 Y_RNA.168-201ENST00000363740 102 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 Y_RNA.410-201ENST00000383992 113 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 MIR563-201ENST00000385080 79 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 MTND3P20-201ENST00000407663 186 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 MIR1185-2-201ENST00000408687 86 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 HSFY7P-201ENST00000432672 318 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 TPTE2P1-204ENST00000435256 593 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 HSFY8P-201ENST00000437934 318 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 RPS24P1-201ENST00000438550 371 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 MTCO3P9-201ENST00000506989 781 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 RNU6-64P-201ENST00000517119 105 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 RNU6-216P-201ENST00000363282 104 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 Y_RNA.203-201ENST00000364106 102 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 Y_RNA.336-201ENST00000365307 109 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 RNU6-278P-201ENST00000390945 109 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 SNORD65C-201ENST00000390962 71 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 RNU6-817P-201ENST00000391083 104 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 AL049545.1-201ENST00000401856 572 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 RPL21P38-201ENST00000418090 167 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 RNU6-897P-201ENST00000517135 105 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 AL139286.2-201ENST00000606838 396 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 RMST_10.1-201ENST00000616309 154 ntBASIC-1.18□□□□□ -2.6
CCDC88BA6NC98 MTND5P42-201ENST00000637720 498 ntBASIC-1.18□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms