Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Rprl3-201ENSMUST00000157400 290 ntBASIC16.09■□□□□ 0.17
Shroom3Q9QXN0 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shroom3Q9QXN0 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shroom3Q9QXN0 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Shroom3Q9QXN0 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Shroom3Q9QXN0 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Shroom3Q9QXN0 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.08■□□□□ 0.17
Shroom3Q9QXN0 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shroom3Q9QXN0 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Mir5126-201ENSMUST00000175513 77 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44357-201ENSMUST00000195897 142 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm19658-201ENSMUST00000196231 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44367-201ENSMUST00000196836 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44350-201ENSMUST00000197197 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44390-201ENSMUST00000197533 144 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44313-201ENSMUST00000198018 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44486-201ENSMUST00000198508 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44454-201ENSMUST00000198541 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44314-201ENSMUST00000199263 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44394-201ENSMUST00000199558 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44484-201ENSMUST00000199873 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44466-201ENSMUST00000200264 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm44359-201ENSMUST00000200671 138 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Rps4l-201ENSMUST00000071745 943 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm25925-201ENSMUST00000158314 306 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shroom3Q9QXN0 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Gm18206-201ENSMUST00000207027 926 ntBASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.06■□□□□ 0.16
Shroom3Q9QXN0 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Dancr-204ENSMUST00000132389 2347 ntBASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms