Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ccdc28bQ8CEG5 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ccdc28bQ8CEG5 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Ccdc28bQ8CEG5 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.92■□□□□ 0.14
Ccdc28bQ8CEG5 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ccdc28bQ8CEG5 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ccdc28bQ8CEG5 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ccdc28bQ8CEG5 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ccdc28bQ8CEG5 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Wnt10b-206ENSMUST00000228546 2709 ntBASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Gm15378-201ENSMUST00000121894 207 ntBASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ccdc28bQ8CEG5 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 AC154855.1-201ENSMUST00000227353 1458 ntBASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Gm44729-201ENSMUST00000206759 2052 ntBASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ccdc28bQ8CEG5 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
Ccdc28bQ8CEG5 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ccdc28bQ8CEG5 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ccdc28bQ8CEG5 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Ccdc28bQ8CEG5 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Ccdc28bQ8CEG5 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC15.88■□□□□ 0.13
Ccdc28bQ8CEG5 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ccdc28bQ8CEG5 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ccdc28bQ8CEG5 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms