Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 AC131586.3-201ENSMUST00000228355 1367 ntBASIC20.83■□□□□ 0.92
Trim28Q62318 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Trim28Q62318 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim28Q62318 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim28Q62318 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Trim28Q62318 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC20.82■□□□□ 0.92
Trim28Q62318 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC20.82■□□□□ 0.92
Trim28Q62318 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC20.82■□□□□ 0.92
Trim28Q62318 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim28Q62318 Gm28265-201ENSMUST00000188201 2319 ntBASIC20.82■□□□□ 0.92
Trim28Q62318 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Trim28Q62318 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Trim28Q62318 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Gm44729-201ENSMUST00000206759 2052 ntBASIC20.81■□□□□ 0.92
Trim28Q62318 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Gm9727-201ENSMUST00000161387 555 ntBASIC20.81■□□□□ 0.92
Trim28Q62318 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC20.81■□□□□ 0.92
Trim28Q62318 Gm19164-201ENSMUST00000210667 640 ntBASIC20.81■□□□□ 0.92
Trim28Q62318 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trim28Q62318 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC20.8■□□□□ 0.92
Trim28Q62318 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Trim28Q62318 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Gm8000-201ENSMUST00000188378 592 ntBASIC20.8■□□□□ 0.92
Trim28Q62318 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 AC132104.2-201ENSMUST00000215011 266 ntBASIC20.8■□□□□ 0.92
Trim28Q62318 AC159093.1-201ENSMUST00000227779 380 ntBASIC20.8■□□□□ 0.92
Trim28Q62318 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC20.8■□□□□ 0.92
Trim28Q62318 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trim28Q62318 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC20.79■□□□□ 0.92
Trim28Q62318 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC20.79■□□□□ 0.92
Trim28Q62318 Gm5264-201ENSMUST00000190584 848 ntBASIC20.79■□□□□ 0.92
Trim28Q62318 Gm37153-201ENSMUST00000193637 231 ntBASIC20.79■□□□□ 0.92
Trim28Q62318 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Trim28Q62318 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC20.79■□□□□ 0.92
Trim28Q62318 AC158538.2-201ENSMUST00000225455 906 ntBASIC20.79■□□□□ 0.92
Trim28Q62318 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
Trim28Q62318 Gm38327-201ENSMUST00000195852 1755 ntBASIC20.79■□□□□ 0.92
Trim28Q62318 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trim28Q62318 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC20.79■□□□□ 0.92
Trim28Q62318 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim28Q62318 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim28Q62318 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim28Q62318 Gm45244-201ENSMUST00000211328 2200 ntBASIC20.78■□□□□ 0.92
Trim28Q62318 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
Trim28Q62318 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC20.78■□□□□ 0.92
Trim28Q62318 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC20.78■□□□□ 0.92
Trim28Q62318 Gm15467-201ENSMUST00000120582 445 ntBASIC20.78■□□□□ 0.92
Trim28Q62318 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC20.78■□□□□ 0.92
Trim28Q62318 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Trim28Q62318 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC20.78■□□□□ 0.92
Trim28Q62318 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Trim28Q62318 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Trim28Q62318 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC20.78■□□□□ 0.92
Trim28Q62318 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim28Q62318 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim28Q62318 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim28Q62318 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim28Q62318 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim28Q62318 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms