Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Limch1Q3UH68 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Limch1Q3UH68 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Gm15794-201ENSMUST00000120182 631 ntBASIC18.91■□□□□ 0.62
Limch1Q3UH68 Gm34391-201ENSMUST00000203706 907 ntBASIC18.91■□□□□ 0.62
Limch1Q3UH68 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Limch1Q3UH68 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Limch1Q3UH68 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Gm32996-201ENSMUST00000199828 1447 ntBASIC18.9■□□□□ 0.62
Limch1Q3UH68 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Limch1Q3UH68 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Limch1Q3UH68 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Limch1Q3UH68 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Limch1Q3UH68 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Limch1Q3UH68 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Limch1Q3UH68 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms