Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vti1aO89116 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Vti1aO89116 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Vti1aO89116 Gm7862-201ENSMUST00000121461 292 ntBASIC17.31■□□□□ 0.36
Vti1aO89116 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Vti1aO89116 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC17.31■□□□□ 0.36
Vti1aO89116 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Vti1aO89116 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.31■□□□□ 0.36
Vti1aO89116 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Vti1aO89116 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.31■□□□□ 0.36
Vti1aO89116 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.31■□□□□ 0.36
Vti1aO89116 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vti1aO89116 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Vti1aO89116 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Vti1aO89116 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Vti1aO89116 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.3■□□□□ 0.36
Vti1aO89116 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.3■□□□□ 0.36
Vti1aO89116 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Vti1aO89116 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.3■□□□□ 0.36
Vti1aO89116 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Vti1aO89116 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vti1aO89116 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.29■□□□□ 0.36
Vti1aO89116 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.29■□□□□ 0.36
Vti1aO89116 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.29■□□□□ 0.36
Vti1aO89116 Mir5131-201ENSMUST00000175426 93 ntBASIC17.29■□□□□ 0.36
Vti1aO89116 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.29■□□□□ 0.36
Vti1aO89116 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Vti1aO89116 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.29■□□□□ 0.36
Vti1aO89116 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vti1aO89116 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Vti1aO89116 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Vti1aO89116 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Vti1aO89116 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Vti1aO89116 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Vti1aO89116 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vti1aO89116 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vti1aO89116 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vti1aO89116 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vti1aO89116 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Vti1aO89116 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms