Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Gm7712-202ENSMUST00000222331 1510 ntBASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Trbv1A0A0B4J1G7 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Gm37025-201ENSMUST00000195159 829 ntBASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Timm23-208ENSMUST00000226683 750 ntBASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Trbv1A0A0B4J1G7 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.39
Trbv1A0A0B4J1G7 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Trbv1A0A0B4J1G7 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm43352-201ENSMUST00000196419 3065 ntBASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Trbv1A0A0B4J1G7 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 AL590614.2-201ENSMUST00000225374 1937 ntBASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 AC156016.1-201ENSMUST00000227190 1035 ntBASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Trbv1A0A0B4J1G7 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms