Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 MIR521-1-201ENST00000384902 87 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 MIR222-201ENST00000384992 110 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 RNU6-1050P-201ENST00000410388 107 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 RN7SKP51-201ENST00000410781 304 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK1Q9Y566 RPL30P4-201ENST00000429309 333 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 C8orf59P1-201ENST00000429930 303 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AC009237.7-201ENST00000447357 229 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 PCMTD1P1-201ENST00000455560 355 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 FO393415.2-201ENST00000480085 343 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AC116353.2-201ENST00000505332 712 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.12□□□□□ -2.23
SHANK1Q9Y566 RNU6-1088P-201ENST00000516850 104 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK1Q9Y566 MIR3942-201ENST00000585264 109 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AC096720.1-201ENST00000604441 183 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 AL022345.1-201ENST00000607292 135 ntBASIC1.12□□□□□ -2.23
SHANK1Q9Y566 Y_RNA.166-201ENST00000363730 102 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AL512604.1-201ENST00000404812 257 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 MIR548F1-201ENST00000408667 84 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 UBE2V1P4-201ENST00000425374 344 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 NFU1P2-201ENST00000448700 469 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC016925.1-201ENST00000458303 298 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 Y_RNA.635-201ENST00000459041 101 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 RNU6-273P-201ENST00000516937 96 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC027288.2-201ENST00000553028 243 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC083806.3-201ENST00000614016 455 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 RNU6-1013P-201ENST00000384180 107 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 Y_RNA.473-201ENST00000384333 102 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 RNU6-601P-201ENST00000384540 107 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 RNU6-1105P-201ENST00000384774 107 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 MIR548F5-201ENST00000408421 86 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC074290.1-201ENST00000448883 135 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 MTND1P11-201ENST00000456661 876 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 PMCHL2-203ENST00000457791 237 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AC018638.8-201ENST00000588755 281 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AL109918.3-201ENST00000603072 338 ntBASIC1.11□□□□□ -2.23
SHANK1Q9Y566 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.11□□□□□ -2.23
SHANK1Q9Y566 Y_RNA.68-201ENST00000362881 102 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 RNA5SP257-201ENST00000363023 116 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 Y_RNA.123-201ENST00000363338 102 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 SNORA3A-201ENST00000364113 130 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 SNORA25B-201ENST00000365507 128 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 RNU6-17P-201ENST00000384245 107 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 RNU6-378P-201ENST00000384324 107 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 RNU6-18P-201ENST00000384527 107 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 RPL21P111-201ENST00000418453 477 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 MTND3P23-201ENST00000431980 347 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC074133.1-201ENST00000515696 183 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC068338.1-201ENST00000565567 176 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC243960.4-201ENST00000600532 288 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC080078.2-201ENST00000603766 501 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 RBM11P1-201ENST00000604951 799 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AL161423.1-201ENST00000613700 262 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 ZNF204P-201ENST00000416749 2397 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 Y_RNA.212-201ENST00000364177 102 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 RNU6-596P-201ENST00000365395 98 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC055731.1-201ENST00000474387 401 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 MIR3198-2-201ENST00000577868 80 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AL121757.2-201ENST00000611223 313 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC093913.1-201ENST00000614178 329 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AL359314.1-201ENST00000616913 261 ntBASIC1.1□□□□□ -2.23
SHANK1Q9Y566 AC009541.1-201ENST00000438279 2662 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 RNU6-212P-201ENST00000362642 104 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 snoU2-30.2-201ENST00000362805 70 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 RNA5SP493-201ENST00000364115 91 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 SNORD32B-201ENST00000364460 84 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 Y_RNA.358-201ENST00000365491 99 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 Y_RNA.404-201ENST00000383978 102 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 AL356432.1-201ENST00000405809 419 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 MIR1262-201ENST00000408276 93 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.09□□□□□ -2.23
SHANK1Q9Y566 AC005534.2-201ENST00000431047 433 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 MTCO3P29-201ENST00000432119 779 ntBASIC1.09□□□□□ -2.23
SHANK1Q9Y566 HMGB3P17-201ENST00000504195 649 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms