Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 Y_RNA.561-201ENST00000384694 100 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 MIR548B-201ENST00000385247 97 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AL079342.1-201ENST00000401460 267 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 RNA5SP504-201ENST00000410676 117 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 COX6CP10-201ENST00000416832 224 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 snoU13.27-201ENST00000459278 104 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 RNU6-329P-201ENST00000459618 107 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AP000870.1-201ENST00000472927 406 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC103851.1-201ENST00000506833 274 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC025647.1-201ENST00000517879 253 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AF235103.2-201ENST00000525753 346 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC104581.2-201ENST00000572227 430 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 MIR4422-201ENST00000581938 83 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC005858.4-201ENST00000623191 700 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 AC068137.4-201ENST00000638485 296 ntBASIC1.51□□□□□ -2.17
FOXA2Q9Y261 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
FOXA2Q9Y261 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
FOXA2Q9Y261 RNU6-1266P-201ENST00000362794 105 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 SNORA33-201ENST00000363664 130 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 U3.8-201ENST00000363675 217 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.179-201ENST00000363844 90 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 SNORA16.1-201ENST00000364597 132 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.287-201ENST00000364853 94 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.415-201ENST00000384012 112 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.5□□□□□ -2.17
FOXA2Q9Y261 AL445685.2-201ENST00000422551 342 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 SNORD5.1-201ENST00000458800 75 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 AC091179.3-201ENST00000474761 144 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 MIR5695-201ENST00000579717 85 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 AC100812.1-201ENST00000607622 580 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 ICE2P2-201ENST00000483823 2787 ntBASIC1.5□□□□□ -2.17
FOXA2Q9Y261 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.5□□□□□ -2.17
FOXA2Q9Y261 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
FOXA2Q9Y261 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.49□□□□□ -2.17
FOXA2Q9Y261 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
FOXA2Q9Y261 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.49□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.48-201ENST00000362710 103 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 RNU6-331P-201ENST00000384724 107 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 MIR583-201ENST00000384846 75 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 RNA5SP467-201ENST00000391274 118 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 AC016909.1-201ENST00000415916 166 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.49□□□□□ -2.17
FOXA2Q9Y261 MTND5P5-201ENST00000503764 376 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 AC024995.1-201ENST00000523014 93 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 AC024614.2-201ENST00000577584 372 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 MIR4742-201ENST00000581069 85 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 AL355802.3-201ENST00000607571 545 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 AC010999.1-201ENST00000611856 324 ntBASIC1.49□□□□□ -2.17
FOXA2Q9Y261 RNU6-842P-201ENST00000384269 107 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 MTND3P8-201ENST00000412909 339 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 MTND3P23-201ENST00000431980 347 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 MTND1P4-201ENST00000435196 415 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 NDUFB4P10-201ENST00000452541 359 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 UBL5P3-201ENST00000475112 231 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.48□□□□□ -2.17
FOXA2Q9Y261 RNA5SP182-201ENST00000516064 82 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 RNU6-970P-201ENST00000516312 107 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 RNU1-142P-201ENST00000516682 145 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 RNU6-1016P-201ENST00000516689 94 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.48□□□□□ -2.17
FOXA2Q9Y261 CBX3P8-201ENST00000532412 525 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.48□□□□□ -2.17
FOXA2Q9Y261 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.48□□□□□ -2.17
FOXA2Q9Y261 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXA2Q9Y261 MIR4709-201ENST00000577272 72 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 SNORA77B-201ENST00000578179 125 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXA2Q9Y261 AC011712.1-201ENST00000588959 234 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 AC018462.2-201ENST00000605375 395 ntBASIC1.48□□□□□ -2.17
FOXA2Q9Y261 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXA2Q9Y261 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 Y_RNA.2-201ENST00000362330 96 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 MIR10B-201ENST00000385011 110 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 RNU6-192P-201ENST00000391253 100 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 MIR548F5-201ENST00000408421 86 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 MIR1261-201ENST00000408659 82 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 MIR1185-2-201ENST00000408687 86 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AC074085.1-201ENST00000413598 418 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 USP9YP16-201ENST00000430287 407 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 RPS3AP52-201ENST00000435639 297 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AC107399.1-201ENST00000451226 265 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 USP9YP23-201ENST00000455085 407 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 RNU7-34P-201ENST00000459394 64 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 HMGN1P12-201ENST00000499125 195 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AC107393.1-201ENST00000512403 346 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AC093303.1-201ENST00000514549 295 ntBASIC1.47□□□□□ -2.17
FOXA2Q9Y261 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.47□□□□□ -2.17
FOXA2Q9Y261 AC060780.3-201ENST00000589464 80 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms