Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MIR5696-201ENST00000578474 85 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 AL133216.2-202ENST00000634512 349 ntBASIC1.59□□□□□ -2.15
VPS54Q9P1Q0 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 RNU1-96P-201ENST00000364163 162 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 SNORA67.2-201ENST00000384300 149 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 RNU6-192P-201ENST00000391253 100 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AL117342.1-201ENST00000404861 406 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 MIR320B2-201ENST00000408479 138 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 RNU7-95P-201ENST00000459222 64 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 RNU7-57P-201ENST00000459540 60 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 RNU6-237P-201ENST00000515985 71 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 RNA5SP54-201ENST00000516951 92 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 RNU1-54P-201ENST00000517181 120 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AF235103.2-201ENST00000525753 346 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 MIR4790-201ENST00000577799 79 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 AC084782.3-201ENST00000612282 578 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 ZNF209P-201ENST00000593450 2304 ntBASIC1.58□□□□□ -2.16
VPS54Q9P1Q0 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 MIR424-201ENST00000362227 98 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 SNORD115-8-201ENST00000363856 82 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 SNORD115-32-201ENST00000364079 82 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 SNORD115-38-201ENST00000365037 82 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 Y_RNA.319-201ENST00000365138 92 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 Y_RNA.473-201ENST00000384333 102 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 MIR153-2-201ENST00000385225 87 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 AC007098.1-201ENST00000420122 367 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 AC245047.4-201ENST00000433189 144 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 SNORA25.14-201ENST00000516481 132 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 RNU1-92P-201ENST00000517017 135 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 AC027288.2-201ENST00000553028 243 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 UBL5P4-201ENST00000562584 236 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 AC016925.2-201ENST00000605108 242 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 AL359697.1-201ENST00000624879 587 ntBASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
VPS54Q9P1Q0 RNU6-842P-201ENST00000384269 107 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 RNU6-541P-201ENST00000384709 110 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 MIR586-201ENST00000385035 97 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 RNA5SP504-201ENST00000410676 117 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 RNU6-57P-201ENST00000411348 103 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 BTF3P4-201ENST00000418852 495 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AC243428.1-201ENST00000421099 264 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 RPS29P29-201ENST00000456396 171 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 RN7SKP210-201ENST00000459176 261 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AC114982.1-201ENST00000469402 321 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 MTND5P5-201ENST00000503764 376 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 RNU2-34P-201ENST00000516534 121 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AP003033.1-201ENST00000527244 415 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AC084364.2-201ENST00000546924 395 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 MIR4742-201ENST00000581069 85 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AP000942.3-201ENST00000603702 160 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 BNIP3P10-201ENST00000605360 577 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AL512598.1-201ENST00000610158 273 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 MIR8074-201ENST00000615081 81 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AC006001.4-201ENST00000622243 395 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AC098679.4-201ENST00000624241 654 ntBASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.56□□□□□ -2.16
VPS54Q9P1Q0 AC010615.1-201ENST00000594254 1764 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-727P-201ENST00000363592 107 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 SNORD87-201ENST00000364849 89 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-596P-201ENST00000365395 98 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 Y_RNA.405-201ENST00000383979 100 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 Y_RNA.451-201ENST00000384200 100 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-17P-201ENST00000384245 107 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-18P-201ENST00000384527 107 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-1235P-201ENST00000384559 107 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 Y_RNA.524-201ENST00000384564 100 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 Y_RNA.561-201ENST00000384694 100 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-510P-201ENST00000391239 108 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-498P-201ENST00000459468 107 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 AC005908.1-201ENST00000468701 347 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 HMGN1P13-201ENST00000505795 138 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-344P-201ENST00000516635 111 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 RNU6-1198P-201ENST00000516904 67 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 MIR4421-201ENST00000578133 69 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 AC080078.2-201ENST00000603766 501 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 AL078596.1-201ENST00000624856 447 ntBASIC1.55□□□□□ -2.16
VPS54Q9P1Q0 MIR338-201ENST00000636369 67 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms