Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 RNU2-38P-201ENST00000410856 79 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 POLR2KP2-201ENST00000438155 177 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 RPL39P38-201ENST00000467018 153 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 HMGN2P9-201ENST00000476875 229 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 RNU6-1338P-201ENST00000516328 91 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 RNU6-155P-201ENST00000516347 100 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 SCARNA24.2-201ENST00000516968 130 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 LARP7P3-201ENST00000579888 337 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 IGHVIII-44-202ENST00000636235 289 ntBASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
CCDC113Q9H0I3 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AC135776.4-201ENST00000624300 1904 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 MIR410-201ENST00000362222 80 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.14-201ENST00000362415 103 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.101-201ENST00000363154 102 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.237-201ENST00000364439 102 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.286-201ENST00000364813 102 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.307-201ENST00000365022 117 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.446-201ENST00000384178 104 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.489-201ENST00000384410 101 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.569-201ENST00000384749 103 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 MIR23A-201ENST00000385245 73 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 RN7SKP123-201ENST00000410732 291 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 RPL19P1-201ENST00000411635 428 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 HSPE1P25-201ENST00000455484 251 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 HMGB3P17-201ENST00000504195 649 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 RN7SKP40-201ENST00000517211 242 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AC023157.2-201ENST00000540596 141 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AC025754.2-201ENST00000606491 432 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AC006386.2-201ENST00000624491 75 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AC012005.1-201ENST00000624575 75 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 AL137790.1-201ENST00000634283 177 ntBASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC113Q9H0I3 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.16-201ENST00000362421 102 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 RNU6-324P-201ENST00000363957 106 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 MT-TG-201ENST00000387429 68 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 RNU2-54P-201ENST00000410299 190 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 AC009238.1-201ENST00000442165 424 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 AC009237.6-201ENST00000446969 424 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 AP004217.1-201ENST00000480579 346 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 RN7SKP43-201ENST00000516173 320 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 RNU6-948P-201ENST00000516374 107 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 RNU6-667P-201ENST00000517186 102 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 AP001282.2-201ENST00000616149 309 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 SDR42E1P4-201ENST00000620894 481 ntBASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC113Q9H0I3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 MIR335-201ENST00000362173 94 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 SNORA26.7-201ENST00000391288 122 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 COTL1P1-201ENST00000422309 375 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AC022018.1-201ENST00000430685 241 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AP001486.1-201ENST00000463339 476 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AL049873.1-201ENST00000480540 376 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 SCGB1D5P-201ENST00000515134 247 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 RNU6-991P-201ENST00000516168 107 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AP002001.1-203ENST00000534002 267 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AC107016.2-201ENST00000547968 190 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AC009487.2-201ENST00000420969 6821 ntBASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC113Q9H0I3 SNORA25B-201ENST00000365507 128 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.383-201ENST00000383855 97 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 Y_RNA.447-201ENST00000384184 113 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 RNU6-514P-201ENST00000384208 107 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 RNU6-975P-201ENST00000384296 105 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 MIR1185-2-201ENST00000408687 86 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 RNA5SP492-201ENST00000411330 114 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 AC009963.1-201ENST00000417265 157 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 AL139281.1-201ENST00000422120 335 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 AC025750.2-201ENST00000442609 450 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 AL137159.1-201ENST00000452808 512 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 RPL23AP3-201ENST00000453844 468 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 SCARNA13-201ENST00000516672 275 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 RNU2-31P-201ENST00000516954 155 ntBASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
CCDC113Q9H0I3 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.9
CCDC113Q9H0I3 AP006437.1-201ENST00000641440 3685 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.477-201ENST00000384352 108 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 SNORD14D-201ENST00000384390 87 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms