Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 RNU6-1041P-201ENST00000516254 102 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 RNU7-172P-201ENST00000517125 64 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 AP003357.1-201ENST00000604497 148 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 U2.20-201ENST00000613956 192 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 RNU6-417P-201ENST00000384712 107 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 MIR526A2-201ENST00000390198 65 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 RNU6-578P-201ENST00000390980 103 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 RN7SKP156-201ENST00000410308 342 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 RNU6-1186P-201ENST00000410429 97 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 AC092427.1-202ENST00000430569 476 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 NDUFB1P1-201ENST00000435191 180 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 AC104389.3-201ENST00000445629 235 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 AL133162.1-201ENST00000463228 453 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.703-201ENST00000516846 111 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 RNU6-856P-201ENST00000516959 98 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 AC008011.1-201ENST00000545989 227 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 AC015720.1-201ENST00000565251 277 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 MIR4429-201ENST00000580105 73 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 AP000553.6-201ENST00000641242 118 ntBASIC2.88□□□□□ -1.95
CCDC140Q96MF4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC140Q96MF4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC140Q96MF4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.75-201ENST00000362927 97 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 RNU1-22P-201ENST00000363334 158 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 RNU6-103P-201ENST00000363686 107 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 SNORD114-6-201ENST00000364393 72 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 RNU6-312P-201ENST00000364629 107 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 RNU6-1323P-201ENST00000384025 107 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.441-201ENST00000384123 112 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 RNU6-376P-201ENST00000384731 106 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 AC010154.1-201ENST00000425857 269 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 AC011406.1-201ENST00000512440 370 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 RN7SKP83-201ENST00000516512 178 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 MIR2114-201ENST00000516645 80 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 RNU7-116P-201ENST00000516940 62 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 RNU1-45P-201ENST00000517191 141 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC140Q96MF4 MIR5187-201ENST00000583479 76 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 MIR3158-1-201ENST00000583596 81 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 AC108706.1-201ENST00000611053 297 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
CCDC140Q96MF4 Z83843.1-201ENST00000604070 3685 ntBASIC2.87□□□□□ -1.95
CCDC140Q96MF4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC140Q96MF4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 RNA5SP387-201ENST00000364226 106 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.229-201ENST00000364347 113 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.272-201ENST00000364696 102 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 RNU6-117P-201ENST00000365415 107 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 RNU6-1072P-201ENST00000384703 107 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 RNU6-443P-201ENST00000384780 107 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 PTMAP2-201ENST00000397627 327 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 SRIP3-201ENST00000413200 219 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 AL162725.1-201ENST00000435405 301 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 RN7SL542P-201ENST00000467147 294 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 RPS29P21-201ENST00000496272 170 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 AC097462.1-201ENST00000514125 324 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 SNORA67.7-201ENST00000516664 135 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 AC127455.1-201ENST00000565496 145 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 AC020914.4-201ENST00000597690 277 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 AC092435.3-201ENST00000565538 3654 ntBASIC2.86□□□□□ -1.95
CCDC140Q96MF4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC140Q96MF4 FAM35DP-201ENST00000323387 2712 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC140Q96MF4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.23-201ENST00000362496 106 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 SNORD115-3-201ENST00000363100 82 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 RNU6-275P-201ENST00000364910 107 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 RNU6-1130P-201ENST00000365434 107 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 SNORD116-18-201ENST00000383961 92 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 U8.11-201ENST00000384699 133 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 MIR616-201ENST00000385293 97 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 MIR1262-201ENST00000408276 93 ntBASIC2.85□□□□□ -1.95
CCDC140Q96MF4 SNORA57.3-201ENST00000411095 141 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms