Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RPS4XP11-201ENST00000446897 772 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 HMGN1P12-201ENST00000499125 195 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 AL512360.1-201ENST00000555346 234 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 AC010620.1-201ENST00000601088 1102 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 AC097065.2-201ENST00000608159 533 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 FAM157A-202ENST00000615155 405 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
HDDC3Q8N4P3 RNU6-53P-201ENST00000365367 106 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 MIR320A-201ENST00000385302 82 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 SEPT14P3-201ENST00000439401 183 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AL732372.2-207ENST00000445840 183 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 SEPT14P2-201ENST00000453405 183 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 RPL23AP75-201ENST00000491601 451 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 SEPT14P4-201ENST00000513445 186 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 Y_RNA.693-201ENST00000516641 110 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 FO082796.1-201ENST00000523795 183 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AC016957.1-201ENST00000534895 309 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AL160236.1-201ENST00000556317 195 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AC005668.1-201ENST00000571142 476 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AP003465.2-201ENST00000602571 373 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 RNU6-89P-201ENST00000606519 100 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AL133215.3-201ENST00000609801 448 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AL359880.1-201ENST00000621879 266 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 AC124864.2-201ENST00000624736 186 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 snoZ196.1-201ENST00000625269 89 ntBASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.4□□□□□ -2.19
HDDC3Q8N4P3 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 Y_RNA.167-201ENST00000363735 109 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 RNU2-66P-201ENST00000410650 161 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 RNU6-1068P-201ENST00000410958 103 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AC008134.1-201ENST00000420943 193 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 EIF1P1-201ENST00000421436 341 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 SNX2P2-201ENST00000424553 323 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AL163195.1-201ENST00000496941 348 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AC107401.1-201ENST00000503426 685 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AC024995.1-201ENST00000523014 93 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AC019288.1-201ENST00000557918 224 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AL355802.3-201ENST00000607571 545 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 AC040896.1-201ENST00000613819 479 ntBASIC1.39□□□□□ -2.19
HDDC3Q8N4P3 SNORD113-7-201ENST00000363762 77 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 RNU6-522P-201ENST00000364497 107 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 RNU6-534P-201ENST00000364877 106 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 MIR513A1-201ENST00000385138 129 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 AL590002.1-201ENST00000406554 418 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 RPL30P7-201ENST00000479312 323 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 RNU6-344P-201ENST00000516635 111 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 RNA5SP54-201ENST00000516951 92 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 SNORD11B-201ENST00000607707 90 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 AC008873.1-201ENST00000625051 138 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 AC068137.3-201ENST00000639191 341 ntBASIC1.38□□□□□ -2.19
HDDC3Q8N4P3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 RNA5SP259-201ENST00000365541 109 ntBASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 Y_RNA.373-201ENST00000365600 103 ntBASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 RNU6-950P-201ENST00000384651 107 ntBASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 MIR487A-201ENST00000385009 80 ntBASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 CALM2P3-201ENST00000400429 449 ntBASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 RNU7-187P-201ENST00000458985 68 ntBASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 RNU6-1281P-201ENST00000516223 105 ntBASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 Z99129.1-201ENST00000612510 255 ntBASIC1.37□□□□□ -2.19
HDDC3Q8N4P3 RNU6-254P-201ENST00000363377 107 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 SNORA25.8-201ENST00000364831 128 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 Y_RNA.287-201ENST00000364853 94 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 MIR194-1-201ENST00000384892 85 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 RNA5SP467-201ENST00000391274 118 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 MTCO1P20-201ENST00000425366 358 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 PCMTD1P1-201ENST00000455560 355 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 RNU1-142P-201ENST00000516682 145 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 AL162413.1-201ENST00000603198 110 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 AL365434.2-201ENST00000607979 234 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 MIR6515-201ENST00000619843 57 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 AC022079.1-201ENST00000621546 602 ntBASIC1.36□□□□□ -2.19
HDDC3Q8N4P3 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 RNU4-9P-201ENST00000364951 139 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 RNU6-1240P-201ENST00000365155 104 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 RNU6-245P-201ENST00000384020 107 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms