Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNA5SP264-201ENST00000363115 107 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 SNORD114-9-201ENST00000364370 72 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 Y_RNA.472-201ENST00000384322 102 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 SNRPGP12-201ENST00000449481 213 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 ELOCP24-201ENST00000456370 334 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 MTCO2P18-201ENST00000457151 658 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 snoU13.25-201ENST00000458945 104 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 AC079140.5-201ENST00000507882 310 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC-0.06□□□□□ -2.42
USP54Q70EL1 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC-0.06□□□□□ -2.42
USP54Q70EL1 AP001180.6-201ENST00000584918 159 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 MIR3192-201ENST00000584920 77 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 AC108747.1-201ENST00000609508 535 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 AC006001.4-201ENST00000622243 395 ntBASIC-0.06□□□□□ -2.42
USP54Q70EL1 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC-0.06□□□□□ -2.42
USP54Q70EL1 AL136310.1-201ENST00000404926 654 ntBASIC-0.07□□□□□ -2.42
USP54Q70EL1 RPL22P17-201ENST00000438729 315 ntBASIC-0.07□□□□□ -2.42
USP54Q70EL1 MTND1P12-201ENST00000455231 147 ntBASIC-0.07□□□□□ -2.42
USP54Q70EL1 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC-0.07□□□□□ -2.42
USP54Q70EL1 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-0.07□□□□□ -2.42
USP54Q70EL1 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-0.07□□□□□ -2.42
USP54Q70EL1 MTND1P22-201ENST00000510572 951 ntBASIC-0.07□□□□□ -2.42
USP54Q70EL1 RNA5SP227-201ENST00000516184 113 ntBASIC-0.07□□□□□ -2.42
USP54Q70EL1 RNU7-99P-201ENST00000516271 62 ntBASIC-0.07□□□□□ -2.42
USP54Q70EL1 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC-0.07□□□□□ -2.42
USP54Q70EL1 Z99497.2-201ENST00000603634 310 ntBASIC-0.07□□□□□ -2.42
USP54Q70EL1 AC068792.1-201ENST00000621354 417 ntBASIC-0.07□□□□□ -2.42
USP54Q70EL1 MIR558-201ENST00000384920 94 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-0.08□□□□□ -2.42
USP54Q70EL1 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 MTND4LP26-201ENST00000518144 282 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC-0.08□□□□□ -2.42
USP54Q70EL1 AC010376.1-201ENST00000522101 334 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AF235103.2-201ENST00000525753 346 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AC141557.1-201ENST00000540982 400 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC-0.08□□□□□ -2.42
USP54Q70EL1 AC023827.1-201ENST00000569247 97 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AC234772.3-201ENST00000602277 528 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AL158042.1-201ENST00000605338 460 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AL157786.1-207ENST00000627771 695 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 MIR1-1-201ENST00000362147 71 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 RNU6-336P-201ENST00000364891 107 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 RNU6-116P-201ENST00000384042 109 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 MIR140-201ENST00000385282 100 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC-0.08□□□□□ -2.42
USP54Q70EL1 RNU6-221P-201ENST00000459541 99 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC-0.08□□□□□ -2.42
USP54Q70EL1 AC025647.1-201ENST00000517879 253 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 MIR4778-201ENST00000577635 80 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 MIR4493-201ENST00000584016 73 ntBASIC-0.08□□□□□ -2.42
USP54Q70EL1 SNORD95.1-201ENST00000364099 68 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 SNORA8.3-201ENST00000384679 139 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 MIR586-201ENST00000385035 97 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 SNORD41-201ENST00000386967 70 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 U8.16-201ENST00000391279 133 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 MRPL42P2-201ENST00000403169 426 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 RNU6-177P-201ENST00000411257 104 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 RNU6-57P-201ENST00000411348 103 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 BTBD7P2-201ENST00000441962 620 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 MTATP6P9-201ENST00000515039 680 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-0.09□□□□□ -2.42
USP54Q70EL1 AC069113.3-201ENST00000521019 150 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 U6.73-201ENST00000619194 103 ntBASIC-0.09□□□□□ -2.42
USP54Q70EL1 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC-0.1□□□□□ -2.42
USP54Q70EL1 SNORD116.1-201ENST00000365628 92 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 RPS3AP3-201ENST00000411933 242 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.1□□□□□ -2.43
USP54Q70EL1 AC116347.2-201ENST00000514912 523 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 RNU6-863P-201ENST00000515989 104 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 ZNF519P3-201ENST00000557158 1032 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC-0.1□□□□□ -2.43
USP54Q70EL1 AC240442.1-201ENST00000616055 283 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 Six3os1_7.1-201ENST00000621512 201 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 AL445984.1-201ENST00000637834 659 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 MIR371B-201ENST00000638082 66 ntBASIC-0.1□□□□□ -2.43
USP54Q70EL1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.11□□□□□ -2.43
USP54Q70EL1 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 Y_RNA.265-201ENST00000364677 108 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.11□□□□□ -2.43
USP54Q70EL1 RNU6-424P-201ENST00000384367 105 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 Y_RNA.576-201ENST00000384781 102 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 MIR520F-201ENST00000384824 87 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 RNU6-1106P-201ENST00000390845 107 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 SNORD115.1-201ENST00000391109 76 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 MIR891A-201ENST00000401237 79 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 MTCO2P34-201ENST00000421994 607 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 RPL23AP54-201ENST00000495129 419 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC-0.11□□□□□ -2.43
USP54Q70EL1 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC-0.11□□□□□ -2.43
USP54Q70EL1 AC073539.2-201ENST00000597113 165 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 AP000907.4-201ENST00000604143 237 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 AC108676.2-201ENST00000605225 163 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 AL096861.1-201ENST00000610899 123 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 AC092634.7-201ENST00000621022 103 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 snoZ196.1-201ENST00000625269 89 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 MIR6079-201ENST00000635807 62 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 RNU6-1305P-201ENST00000364353 104 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 RNU6-641P-201ENST00000384006 107 ntBASIC-0.11□□□□□ -2.43
USP54Q70EL1 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.11□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms