Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU1-123P-201ENST00000458950 160 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 RNU6-1146P-201ENST00000516282 102 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 RNU6-256P-201ENST00000516747 97 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 RNA5SP54-201ENST00000516951 92 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 AC015688.6-201ENST00000577737 104 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 MIR3672-201ENST00000584290 82 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 POLR3GP2-201ENST00000588366 668 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 AP003465.2-201ENST00000602571 373 ntBASIC1.44□□□□□ -2.18
CCDC40Q4G0X9 Y_RNA.135-201ENST00000363439 95 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 MIR194-1-201ENST00000384892 85 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 MIR517A-201ENST00000385001 87 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 MIR150-201ENST00000385048 84 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 RPS27P16-201ENST00000425758 201 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AC027119.1-201ENST00000440877 241 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 DAP3P1-201ENST00000441522 278 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 MTCO2P7-201ENST00000446518 666 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AC079140.2-201ENST00000506193 142 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AP003033.1-201ENST00000527244 415 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AC068338.1-201ENST00000565567 176 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 AC006504.8-201ENST00000621046 635 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 snoZ196.1-201ENST00000625269 89 ntBASIC1.43□□□□□ -2.18
CCDC40Q4G0X9 SNORD115-32-201ENST00000364079 82 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 RNU6-245P-201ENST00000384020 107 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 MIR515-2-201ENST00000384883 83 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 MIR515-1-201ENST00000384884 83 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 RNA5SP467-201ENST00000391274 118 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 MIR1253-201ENST00000408273 105 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 RNU4-62P-201ENST00000410125 130 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 COX6CP10-201ENST00000416832 224 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 MTND3P21-201ENST00000433774 331 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 AC015922.2-201ENST00000435593 184 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 AL135790.2-201ENST00000437701 267 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 RNA5SP458-201ENST00000516188 119 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 RNU6-58P-201ENST00000517143 103 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 AC019176.1-201ENST00000518519 225 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 AC097065.2-201ENST00000608159 533 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 AC024614.3-201ENST00000637860 256 ntBASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.42□□□□□ -2.18
CCDC40Q4G0X9 Y_RNA.212-201ENST00000364177 102 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 RNU6-534P-201ENST00000364877 106 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 Y_RNA.414-201ENST00000384011 101 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 MRPL35P1-201ENST00000404272 572 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 RNU6-221P-201ENST00000459541 99 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 ACA59.1-201ENST00000515966 143 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 AC025647.1-201ENST00000517879 253 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 AC005668.1-201ENST00000571142 476 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 MIR4709-201ENST00000577272 72 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 MIR4742-201ENST00000581069 85 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 AP000942.3-201ENST00000603702 160 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 SNORD11B-201ENST00000607707 90 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.41□□□□□ -2.18
CCDC40Q4G0X9 MTND5P35-201ENST00000557537 1720 ntBASIC1.4□□□□□ -2.18
CCDC40Q4G0X9 RNA5SP432-201ENST00000362480 116 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 SNORD33-201ENST00000362761 85 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 Y_RNA.100-201ENST00000363141 102 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 Y_RNA.319-201ENST00000365138 92 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 RN7SKP210-201ENST00000459176 261 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 AC004223.1-201ENST00000479840 271 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 HMGN1P12-201ENST00000499125 195 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 AC109635.3-201ENST00000529536 185 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 MIR3937-201ENST00000580135 106 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 AC019193.3-201ENST00000609144 554 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 AC091812.1-201ENST00000432235 1948 ntBASIC1.4□□□□□ -2.19
CCDC40Q4G0X9 MIR153-2-201ENST00000385225 87 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AC004965.1-201ENST00000413033 213 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AC008134.1-201ENST00000420943 193 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AL445305.1-201ENST00000432577 575 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AL163195.1-201ENST00000496941 348 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 RNU6-237P-201ENST00000515985 71 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 SNORA25.14-201ENST00000516481 132 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 RNU6-1198P-201ENST00000516904 67 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AC024995.1-201ENST00000523014 93 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AC027288.2-201ENST00000553028 243 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AC124303.1-201ENST00000605703 360 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AL512598.1-201ENST00000610158 273 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms