Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MIR1283-1-201ENST00000408494 87 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.19□□□□□ -2.06
COL28A1Q2UY09 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.19□□□□□ -2.06
COL28A1Q2UY09 WARS2P1-201ENST00000429678 537 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
COL28A1Q2UY09 AC007395.1-201ENST00000451333 677 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.19□□□□□ -2.06
COL28A1Q2UY09 RNU6-699P-201ENST00000517081 110 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 AC091144.1-201ENST00000519573 138 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 AC144568.1-201ENST00000520139 137 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 ANP32BP3-201ENST00000559213 706 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 UBL5P4-201ENST00000562584 236 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 AC009127.3-201ENST00000570531 403 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 AL031274.2-201ENST00000599419 203 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 AL080274.1-201ENST00000605565 220 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 SNORD11B-201ENST00000607707 90 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIR1244-1-201ENST00000612829 85 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIR1291-201ENST00000627649 87 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIR1244-3-201ENST00000635744 85 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIR1244-2-201ENST00000636449 85 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIR1244-4-202ENST00000636813 85 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.112-201ENST00000363250 102 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 SNORA3A-201ENST00000364113 130 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 RNU1-115P-201ENST00000365329 160 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 RNU6-438P-201ENST00000365561 103 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 RNU6-793P-201ENST00000384233 104 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 SNORA67.2-201ENST00000384300 149 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.557-201ENST00000384680 107 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.18□□□□□ -2.06
COL28A1Q2UY09 AC018865.2-201ENST00000423631 129 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 AC027575.1-201ENST00000481064 460 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.18□□□□□ -2.06
COL28A1Q2UY09 RNU6-911P-201ENST00000516523 104 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 CYCSP23-201ENST00000519781 313 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 AC121758.2-201ENST00000553271 193 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 AC005296.1-201ENST00000616145 209 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 AC006026.1-201ENST00000444025 1803 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 AC009487.4-201ENST00000624969 3585 ntBASIC2.18□□□□□ -2.06
COL28A1Q2UY09 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL28A1Q2UY09 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL28A1Q2UY09 MIR378A-201ENST00000362177 66 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 MIRLET7G-201ENST00000362280 84 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.358-201ENST00000365491 99 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.419-201ENST00000384041 102 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.428-201ENST00000384078 102 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 MIR524-201ENST00000385242 87 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 HMGN2P39-201ENST00000398005 273 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.592-201ENST00000410274 109 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 RNA5SP270-201ENST00000411361 118 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 MRPS18CP6-201ENST00000423587 223 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.17□□□□□ -2.06
COL28A1Q2UY09 NDUFB4P10-201ENST00000452541 359 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.17□□□□□ -2.06
COL28A1Q2UY09 RNU1-131P-201ENST00000458943 161 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.17□□□□□ -2.06
COL28A1Q2UY09 SNORD116.3-201ENST00000517176 78 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 MIR5695-201ENST00000579717 85 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 AC125232.2-201ENST00000592457 143 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 AC067747.1-201ENST00000608026 250 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 AC010999.1-201ENST00000611856 324 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 MIR6845-201ENST00000613182 61 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 AC022202.1-201ENST00000613515 211 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 MTND4P29-201ENST00000503122 1372 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 WWP1P1-201ENST00000466609 2769 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 AC016717.2-201ENST00000609089 5141 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 AC092881.1-201ENST00000638218 2733 ntBASIC2.17□□□□□ -2.06
COL28A1Q2UY09 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.5-201ENST00000362334 102 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 RNY1P10-201ENST00000363268 113 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.179-201ENST00000363844 90 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.16□□□□□ -2.06
COL28A1Q2UY09 AL137792.2-201ENST00000443484 235 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 RNU7-87P-201ENST00000459343 62 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 AC114982.1-201ENST00000469402 321 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 AC091179.3-201ENST00000474761 144 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 HMGN2P9-201ENST00000476875 229 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.16□□□□□ -2.06
COL28A1Q2UY09 AC105758.1-201ENST00000506038 399 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 RNU2-34P-201ENST00000516534 121 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 SNORA31.25-201ENST00000517242 134 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 RRN3P3-201ENST00000549207 578 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.16□□□□□ -2.06
COL28A1Q2UY09 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.16□□□□□ -2.06
COL28A1Q2UY09 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.16□□□□□ -2.06
COL28A1Q2UY09 AC090971.5-201ENST00000621102 293 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 AC138305.3-201ENST00000624988 240 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 AC068205.3-201ENST00000636385 468 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 MIR219B-201ENST00000637023 88 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 ZNF720P1-201ENST00000562403 1939 ntBASIC2.16□□□□□ -2.06
COL28A1Q2UY09 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.15□□□□□ -2.07
COL28A1Q2UY09 MIR21-201ENST00000362134 72 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 RNU4-42P-201ENST00000364738 142 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 RNA5SP504-201ENST00000410676 117 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 AC114482.1-201ENST00000418010 247 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.15□□□□□ -2.07
COL28A1Q2UY09 MTCO1P44-201ENST00000441935 243 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 AL357134.1-201ENST00000445848 426 ntBASIC2.15□□□□□ -2.07
COL28A1Q2UY09 HMGB3P3-201ENST00000510526 400 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms