Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.54□□□□□ -2.16
SHHQ15465 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.54□□□□□ -2.16
SHHQ15465 MIR151B-201ENST00000584249 96 ntBASIC1.54□□□□□ -2.16
SHHQ15465 AC010928.2-201ENST00000588017 287 ntBASIC1.54□□□□□ -2.16
SHHQ15465 SNRPGP17-201ENST00000603780 214 ntBASIC1.54□□□□□ -2.16
SHHQ15465 AC018462.2-201ENST00000605375 395 ntBASIC1.54□□□□□ -2.16
SHHQ15465 AC022202.1-201ENST00000613515 211 ntBASIC1.54□□□□□ -2.16
SHHQ15465 AC083806.3-201ENST00000614016 455 ntBASIC1.54□□□□□ -2.16
SHHQ15465 AC007485.1-201ENST00000616755 206 ntBASIC1.54□□□□□ -2.16
SHHQ15465 Y_RNA.5-201ENST00000362334 102 ntBASIC1.53□□□□□ -2.16
SHHQ15465 SNORD42.2-201ENST00000365570 69 ntBASIC1.53□□□□□ -2.16
SHHQ15465 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.53□□□□□ -2.16
SHHQ15465 Y_RNA.533-201ENST00000384596 114 ntBASIC1.53□□□□□ -2.16
SHHQ15465 MIR559-201ENST00000385188 96 ntBASIC1.53□□□□□ -2.16
SHHQ15465 MT-TD-201ENST00000387419 68 ntBASIC1.53□□□□□ -2.16
SHHQ15465 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.53□□□□□ -2.16
SHHQ15465 PMCHL1-202ENST00000423102 261 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AC096644.2-201ENST00000429278 159 ntBASIC1.53□□□□□ -2.16
SHHQ15465 Z82188.1-201ENST00000436709 154 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AL118496.2-201ENST00000448300 230 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AC107399.1-201ENST00000451226 265 ntBASIC1.53□□□□□ -2.16
SHHQ15465 snoU13.14-201ENST00000459372 104 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AP001025.1-201ENST00000486139 332 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AC105758.1-201ENST00000506038 399 ntBASIC1.53□□□□□ -2.16
SHHQ15465 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.53□□□□□ -2.16
SHHQ15465 RNA5SP436-201ENST00000516020 115 ntBASIC1.53□□□□□ -2.16
SHHQ15465 SNORA43.2-201ENST00000516652 128 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.53□□□□□ -2.16
SHHQ15465 CYCSP27-201ENST00000527643 293 ntBASIC1.53□□□□□ -2.16
SHHQ15465 CBX3P8-201ENST00000532412 525 ntBASIC1.53□□□□□ -2.16
SHHQ15465 IMMP1LP2-201ENST00000552954 492 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AL078605.1-201ENST00000603529 500 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AC005014.2-201ENST00000607795 599 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AC040896.1-201ENST00000613819 479 ntBASIC1.53□□□□□ -2.16
SHHQ15465 AC090574.1-201ENST00000623186 233 ntBASIC1.53□□□□□ -2.16
SHHQ15465 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SHHQ15465 SNORD56.1-201ENST00000362913 68 ntBASIC1.52□□□□□ -2.17
SHHQ15465 SNORD50.1-201ENST00000362987 71 ntBASIC1.52□□□□□ -2.17
SHHQ15465 SNORD114-19-201ENST00000363072 75 ntBASIC1.52□□□□□ -2.17
SHHQ15465 RNU6-1297P-201ENST00000384415 104 ntBASIC1.52□□□□□ -2.17
SHHQ15465 SNORD116-20-201ENST00000384529 92 ntBASIC1.52□□□□□ -2.17
SHHQ15465 AL591034.2-201ENST00000402839 359 ntBASIC1.52□□□□□ -2.17
SHHQ15465 ARL5AP1-201ENST00000418991 388 ntBASIC1.52□□□□□ -2.17
SHHQ15465 AL133396.1-201ENST00000432048 687 ntBASIC1.52□□□□□ -2.17
SHHQ15465 MTCO3P29-201ENST00000432119 779 ntBASIC1.52□□□□□ -2.17
SHHQ15465 AC243964.1-201ENST00000441814 261 ntBASIC1.52□□□□□ -2.17
SHHQ15465 SNRPGP13-201ENST00000442212 177 ntBASIC1.52□□□□□ -2.17
SHHQ15465 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.52□□□□□ -2.17
SHHQ15465 AC006026.2-201ENST00000457376 180 ntBASIC1.52□□□□□ -2.17
SHHQ15465 Y_RNA.635-201ENST00000459041 101 ntBASIC1.52□□□□□ -2.17
SHHQ15465 U8.22-201ENST00000459141 133 ntBASIC1.52□□□□□ -2.17
SHHQ15465 SNRPGP7-201ENST00000469016 106 ntBASIC1.52□□□□□ -2.17
SHHQ15465 MTCYBP40-201ENST00000509390 1135 ntBASIC1.52□□□□□ -2.17
SHHQ15465 RNU6-1016P-201ENST00000516689 94 ntBASIC1.52□□□□□ -2.17
SHHQ15465 AC087854.1-201ENST00000519706 414 ntBASIC1.52□□□□□ -2.17
SHHQ15465 HSBP1P1-201ENST00000555205 166 ntBASIC1.52□□□□□ -2.17
SHHQ15465 CPDP1-201ENST00000579660 283 ntBASIC1.52□□□□□ -2.17
SHHQ15465 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.52□□□□□ -2.17
SHHQ15465 MIR3171-201ENST00000584270 74 ntBASIC1.52□□□□□ -2.17
SHHQ15465 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.52□□□□□ -2.17
SHHQ15465 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.52□□□□□ -2.17
SHHQ15465 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.52□□□□□ -2.17
SHHQ15465 AC126177.8-201ENST00000618339 1015 ntBASIC1.52□□□□□ -2.17
SHHQ15465 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.52□□□□□ -2.17
SHHQ15465 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.52□□□□□ -2.17
SHHQ15465 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
SHHQ15465 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
SHHQ15465 RNU6-858P-201ENST00000362436 107 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RNU1-23P-201ENST00000363361 144 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RNU6-105P-201ENST00000363909 104 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RNU6-708P-201ENST00000384217 107 ntBASIC1.51□□□□□ -2.17
SHHQ15465 MIR521-1-201ENST00000384902 87 ntBASIC1.51□□□□□ -2.17
SHHQ15465 MIR29C-201ENST00000385231 88 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RNA5SP390-201ENST00000410191 113 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RNU6-293P-201ENST00000411259 106 ntBASIC1.51□□□□□ -2.17
SHHQ15465 AC113618.1-201ENST00000416747 285 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RPL9P9-202ENST00000466501 579 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RPL30P12-201ENST00000474666 353 ntBASIC1.51□□□□□ -2.17
SHHQ15465 MED28P2-201ENST00000475771 317 ntBASIC1.51□□□□□ -2.17
SHHQ15465 AC022447.4-201ENST00000504053 364 ntBASIC1.51□□□□□ -2.17
SHHQ15465 AK3P2-201ENST00000507976 429 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RNU6-699P-201ENST00000517081 110 ntBASIC1.51□□□□□ -2.17
SHHQ15465 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.51□□□□□ -2.17
SHHQ15465 AP004607.1-201ENST00000524456 203 ntBASIC1.51□□□□□ -2.17
SHHQ15465 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.51□□□□□ -2.17
SHHQ15465 AC018630.3-201ENST00000542637 96 ntBASIC1.51□□□□□ -2.17
SHHQ15465 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.51□□□□□ -2.17
SHHQ15465 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.51□□□□□ -2.17
SHHQ15465 AC109446.1-201ENST00000566172 220 ntBASIC1.51□□□□□ -2.17
SHHQ15465 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.51□□□□□ -2.17
SHHQ15465 AL080274.1-201ENST00000605565 220 ntBASIC1.51□□□□□ -2.17
SHHQ15465 AC019193.3-201ENST00000609144 554 ntBASIC1.51□□□□□ -2.17
SHHQ15465 AL133215.3-201ENST00000609801 448 ntBASIC1.51□□□□□ -2.17
SHHQ15465 uc_338.22-201ENST00000622722 187 ntBASIC1.51□□□□□ -2.17
SHHQ15465 SCARNA4-202ENST00000625402 129 ntBASIC1.51□□□□□ -2.17
SHHQ15465 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.51□□□□□ -2.17
SHHQ15465 SNORA43.4-201ENST00000629559 138 ntBASIC1.51□□□□□ -2.17
SHHQ15465 U4.7-201ENST00000638126 106 ntBASIC1.51□□□□□ -2.17
SHHQ15465 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.5□□□□□ -2.17
SHHQ15465 Y_RNA.2-201ENST00000362330 96 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms