Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
SF3A1Q15459 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SF3A1Q15459 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SF3A1Q15459 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.19□□□□□ -1.9
SF3A1Q15459 RNU6-1310P-201ENST00000384153 107 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 RN7SKP284-201ENST00000411002 343 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 AL139132.1-201ENST00000431587 344 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.19□□□□□ -1.9
SF3A1Q15459 AL357134.1-201ENST00000445848 426 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 AC010655.3-201ENST00000478818 450 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 RNA5SP76-201ENST00000516277 87 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 RNY3P15-201ENST00000516297 97 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 RNA5SP137-201ENST00000516833 135 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 RNU6-897P-201ENST00000517135 105 ntBASIC3.19□□□□□ -1.9
SF3A1Q15459 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.19□□□□□ -1.9
SF3A1Q15459 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.19□□□□□ -1.9
SF3A1Q15459 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
SF3A1Q15459 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SF3A1Q15459 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SF3A1Q15459 SNORA44-201ENST00000384584 132 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 MIR29C-201ENST00000385231 88 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 RNU2-20P-201ENST00000410425 191 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 EEF1A1P41-201ENST00000414667 207 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 AC005002.2-201ENST00000438228 269 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 MTCO1P44-201ENST00000441935 243 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.18□□□□□ -1.9
SF3A1Q15459 AL109933.2-201ENST00000452651 260 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.18□□□□□ -1.9
SF3A1Q15459 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.18□□□□□ -1.9
SF3A1Q15459 AC136443.5-201ENST00000603741 370 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 AL590240.4-201ENST00000616908 390 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 AC006001.4-201ENST00000622243 395 ntBASIC3.18□□□□□ -1.9
SF3A1Q15459 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SF3A1Q15459 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.18□□□□□ -1.9
SF3A1Q15459 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SF3A1Q15459 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
SF3A1Q15459 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
SF3A1Q15459 RNU6-1266P-201ENST00000362794 105 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 SNORA3A-201ENST00000364113 130 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 RNU6-937P-201ENST00000384325 106 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 MIR1185-2-201ENST00000408687 86 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 RPS27AP9-201ENST00000477681 438 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 RNU6-1046P-201ENST00000516538 107 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.17□□□□□ -1.9
SF3A1Q15459 RPL12P50-201ENST00000603116 116 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.17□□□□□ -1.9
SF3A1Q15459 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.17□□□□□ -1.9
SF3A1Q15459 AC004467.1-201ENST00000615678 330 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 AC091932.3-201ENST00000624223 323 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 FO624990.1-201ENST00000636373 85 ntBASIC3.17□□□□□ -1.9
SF3A1Q15459 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.17□□□□□ -1.9
SF3A1Q15459 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SF3A1Q15459 RNU6-23P-201ENST00000363283 107 ntBASIC3.16□□□□□ -1.9
SF3A1Q15459 AC007064.1-201ENST00000412238 351 ntBASIC3.16□□□□□ -1.9
SF3A1Q15459 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.16□□□□□ -1.9
SF3A1Q15459 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.16□□□□□ -1.9
SF3A1Q15459 AC073910.1-201ENST00000445047 438 ntBASIC3.16□□□□□ -1.9
SF3A1Q15459 AP002001.1-203ENST00000534002 267 ntBASIC3.16□□□□□ -1.9
SF3A1Q15459 MIR376A1-201ENST00000616574 68 ntBASIC3.16□□□□□ -1.9
SF3A1Q15459 MIR340-201ENST00000362125 95 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 Y_RNA.183-201ENST00000363882 113 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 AC008134.1-201ENST00000420943 193 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 AC107083.1-201ENST00000439643 279 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 RNU6-221P-201ENST00000459541 99 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 RN7SL297P-201ENST00000483161 293 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 RNU6-635P-201ENST00000516651 102 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 RNU7-110P-201ENST00000516891 62 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 RNU6-856P-201ENST00000516959 98 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.15□□□□□ -1.91
SF3A1Q15459 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.15□□□□□ -1.91
SF3A1Q15459 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.15□□□□□ -1.91
SF3A1Q15459 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
SF3A1Q15459 AL159152.1-201ENST00000635019 2587 ntBASIC3.15□□□□□ -1.91
SF3A1Q15459 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.14□□□□□ -1.91
SF3A1Q15459 Y_RNA.230-201ENST00000364348 109 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 RNU6-1175P-201ENST00000365200 107 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 RNU5A-5P-201ENST00000411054 116 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 BX510359.4-201ENST00000423750 193 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.14□□□□□ -1.91
SF3A1Q15459 SUMO1P4-201ENST00000429430 302 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 AP005660.1-201ENST00000522972 293 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 AC055872.1-201ENST00000570978 278 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SF3A1Q15459 AC009487.4-201ENST00000624969 3585 ntBASIC3.14□□□□□ -1.91
SF3A1Q15459 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SF3A1Q15459 SNORD114-6-201ENST00000364393 72 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 RNU6-1164P-201ENST00000364428 107 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 RNU6-21P-201ENST00000384710 107 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 RNU1-104P-201ENST00000517280 175 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 AC087441.2-201ENST00000529141 262 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 MIR4446-201ENST00000578505 67 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SF3A1Q15459 AC006380.1-201ENST00000603598 186 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 AC006023.1-201ENST00000603944 259 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 AL033523.1-201ENST00000605153 153 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 AC011373.1-201ENST00000607270 237 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 AC131280.1-202ENST00000624067 4211 ntBASIC3.13□□□□□ -1.91
SF3A1Q15459 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms